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WormBase Tree Display for Gene: WBGene00032225

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Name Class

WBGene00032225SMapS_parentSequencecb25.fpc2397
IdentityVersion2
NameCGC_nameCbr-spp-3From_analysisInferred_from_orthology
Sequence_nameCBG11015
Molecular_nameCBG11015
CBG11015.1
CBP08690
Other_nameCBG_11015Accession_evidenceNDBHE601482
Public_nameCbr-spp-3
DB_infoDatabaseNDBlocus_tagCBG_11015
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-spp-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspp
RNASeq_FPKMWBls:00000021298.77From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1437.33From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1582.95From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
876.038From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1510.14From_analysisRNASeq.briggsae.WBls:0000002.control_median
1715.56From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2965.91From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.842325From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.68465From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.56155From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000040From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.649596From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
1.17176From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.99042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
3.2188From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:0000027249.157From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
441.028From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
520.277From_analysisRNASeq.briggsae.WBls:0000027.control_mean
870.646From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1048.06From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
652.223From_analysisRNASeq.briggsae.WBls:0000027.control_mean
655.837From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:00000351555.59From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381216.04From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1225.83From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1269.01From_analysisRNASeq.briggsae.WBls:0000038.control_median
1312.19From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
1589.77From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
736.368From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000411705.42From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
633.814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
698.32From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
793.365From_analysisRNASeq.briggsae.WBls:0000041.control_median
888.411From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
981.491From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1296.92From_analysisRNASeq.briggsae.WBls:0000041.control_median
1371.95From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2132.35From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
2173.38From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000631577.09From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
615.805From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
636.948From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
645.138From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
694.996From_analysisRNASeq.briggsae.WBls:0000063.control_mean
641.043From_analysisRNASeq.briggsae.WBls:0000063.control_median
702.259From_analysisRNASeq.briggsae.WBls:0000063.control_mean
738.574From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101698.32From_analysisRNASeq.briggsae.total_over_all_stages.control_median
760.535From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
717.344From_analysisRNASeq.briggsae.total_over_all_stages.control_median
818.938From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (25)
ParalogWBGene00032227Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00036987Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00032226Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00036616Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040671Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040672Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040673Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041616Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00270753Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Saposin B type, region 2; Saposin B type domain; Saposin-like type B, region 2; and Saposin-like. Is an ortholog of C. elegans spp-3. In C. elegans, spp-3 is involved in defense response to Gram-negative bacterium and defense response to Gram-positive bacterium.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG11015
Corresponding_CDS_historyCBG11015:bp194
Corresponding_transcriptCBG11015.1
Other_sequenceOden_isotig24157
CRC07887_1
CBC05377_1
CR08323
CJC04748_1
Experimental_infoExpr_patternExpr1053649
Microarray_resultsGPL8303_CB6_WBGene00032225_A
GPL14143_CBG11015_77-136_0.744_19_A
GPL14143_CBG11015_183-242_0.934_2_C
GPL14143_CBG11015_190-249_0.936_1_B
MethodGene