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WormBase Tree Display for Gene: WBGene00032035

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Name Class

WBGene00032035SMapS_parentSequencecb25.fpc2374a
IdentityVersion2
NameCGC_nameCbr-vab-2From_analysisInferred_from_orthology
Sequence_nameCBG10748
Molecular_nameCBG10748
CBG10748.1
CBP16986
Other_nameCBG_10748Accession_evidenceNDBHE600916
Public_nameCbr-vab-2
DB_infoDatabaseNDBlocus_tagCBG_10748
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-vab-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvab
RNASeq_FPKMWBls:00000025.084From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
7.19259From_analysisRNASeq.briggsae.WBls:0000002.control_mean
7.35507From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
9.13871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
4.71191From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
6.21953From_analysisRNASeq.briggsae.WBls:0000002.control_median
6.57242From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000327.8331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
28.6732From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
29.5133From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
21.2269From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
26.1911From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000457.7848From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
59.8851From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
61.9853From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
57.8849From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
61.875From_analysisRNASeq.briggsae.WBls:0000004.control_mean
64.9117From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
66.8081From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002712.7919From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.86484From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
30.1534From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.35748From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
11.9488From_analysisRNASeq.briggsae.WBls:0000027.control_median
13.979From_analysisRNASeq.briggsae.WBls:0000027.control_mean
17.5402From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000359.79443From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.0754From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
18.0585From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
4.10189From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
6.97621From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
8.52581From_analysisRNASeq.briggsae.WBls:0000038.control_median
9.803From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:00000411.57731From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.70803From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.80334From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.89865From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.50572From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.8389From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.7566From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.16687From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.61456From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
5.3638From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.931405From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.51316From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.73182From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.98105From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.20334From_analysisRNASeq.briggsae.WBls:0000063.control_mean
4.85924From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
1.35114From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
1.62249From_analysisRNASeq.briggsae.WBls:0000063.control_median
2.0613From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010111.7506From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
6.35748From_analysisRNASeq.briggsae.total_over_all_stages.control_median
15.3731From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
6.66684From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00135426
Ortholog (26)
ParalogWBGene00024824Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027088Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029495Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be located in membrane. Is an ortholog of C. elegans vab-2. In C. elegans, vab-2 is involved in ephrin receptor signaling pathway and epidermis morphogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG10748
Corresponding_CDS_historyCBG10748:bp194
CBG10748:bp255
Corresponding_transcriptCBG10748.1
Other_sequenceEX564327.1
EX566143.1
Dviv_isotig15487
Acan_isotig10223
ACC08414_1
Experimental_infoExpr_patternExpr1057527
Microarray_resultsGPL8303_CB6_WBGene00032035_A
GPL8303_CB6_WBGene00032035_B
GPL14143_CBG10748_400-459_0.941_9_B
GPL14143_CBG10748_617-676_0.966_1_A
GPL14143_CBG10748_639-698_0.838_64_C
MethodGene