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WormBase Tree Display for Gene: WBGene00031212

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Name Class

WBGene00031212SMapS_parentSequencecb25.fpc2220c
IdentityVersion2
NameCGC_nameCbr-scpl-4From_analysisInferred_from_orthology
Sequence_nameCBG09654
Molecular_nameCBG09654
CBG09654.1
CBP45117
Other_nameCBG_09654Accession_evidenceNDBHE600998
Public_nameCbr-scpl-4
DB_infoDatabaseNDBlocus_tagCBG_09654
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:00WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-scpl-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classscpl
RNASeq_FPKMWBls:000000229.3515From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
37.633From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
43.19From_analysisRNASeq.briggsae.WBls:0000002.control_mean
62.5856From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
42.9442From_analysisRNASeq.briggsae.WBls:0000002.control_median
44.4564From_analysisRNASeq.briggsae.WBls:0000002.control_mean
48.2554From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000323.6341From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
25.6443From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
27.6545From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
22.6803From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
24.6563From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000429.1912From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
29.6299From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
30.0685From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
28.5169From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
29.2926From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
30.1587From_analysisRNASeq.briggsae.WBls:0000004.control_mean
33.7244From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002725.2417From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.48234From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
63.7387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
8.50411From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
19.9207From_analysisRNASeq.briggsae.WBls:0000027.control_median
26.7656From_analysisRNASeq.briggsae.WBls:0000027.control_mean
31.3374From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003534.2482From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003819.518From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
30.1641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
35.3795From_analysisRNASeq.briggsae.WBls:0000038.control_median
40.4993From_analysisRNASeq.briggsae.WBls:0000038.control_mean
40.5948From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
71.7204From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004146.1088From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
51.6058From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
52.814From_analysisRNASeq.briggsae.WBls:0000041.control_mean
53.515From_analysisRNASeq.briggsae.WBls:0000041.control_median
55.4243From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
58.1173From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
55.5696From_analysisRNASeq.briggsae.WBls:0000041.control_median
55.7149From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
55.9734From_analysisRNASeq.briggsae.WBls:0000041.control_mean
68.8694From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
43.4233From_analysisRNASeq.briggsae.WBls:0000063.control_mean
49.7632From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
52.0365From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
55.4779From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
59.839From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
41.5713From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
43.1147From_analysisRNASeq.briggsae.WBls:0000063.control_mean
50.8998From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010139.2918From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
42.1015From_analysisRNASeq.briggsae.total_over_all_stages.control_median
39.4586From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
41.083From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (30)
ParalogWBGene00026641Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033174Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033948Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: HAD-like superfamily; FCP1 homology domain; HAD superfamily; NLI interacting factor-like phosphatase; and Mitochondrial import inner membrane translocase subunit Tim50. Is an ortholog of C. elegans scpl-4.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG09654
Corresponding_CDS_historyCBG09654:bp194
CBG09654:bp205
CBG09654:bp255
Corresponding_transcriptCBG09654.1
Other_sequence (39)
Experimental_infoExpr_patternExpr1058370
Microarray_resultsGPL8303_CB6_WBGene00031212_A
GPL8303_CB6_WBGene00031212_B
GPL8303_CB6_WBGene00031212_C
GPL14143_CBG09654_802-861_0.888_37_B
GPL14143_CBG09654_936-995_0.916_11_C
GPL14143_CBG09654_1285-1344_0.952_1_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene