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WormBase Tree Display for Gene: WBGene00030808

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Name Class

WBGene00030808SMapS_parentSequencecb25.fpc2193
IdentityVersion3
NameCGC_nameCbr-lin-39From_analysisInferred_from_orthology
Sequence_nameCBG09167
Molecular_nameCBG09167
CBG09167.1
CBP02235
Other_nameCBG_09167Accession_evidenceNDBHE601302
Public_nameCbr-lin-39
DB_infoDatabaseNDBlocus_tagCBG_09167
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:00WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lin-39
313 Nov 2007 13:53:01WBPerson2970EventAcquires_mergeWBGene00000339
Acquires_mergeWBGene00000339
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
AlleleWBVar01473719
WBVar01473720
RNASeq_FPKMWBls:000000216.7366From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.83434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
7.66645From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
8.7458From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.1752From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
5.42083From_analysisRNASeq.briggsae.WBls:0000002.control_median
7.35315From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000032.78348From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
3.69153From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
4.59959From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
2.46102From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000411.4521From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
12.102From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
12.7519From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
12.5988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
13.2854From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
13.2883From_analysisRNASeq.briggsae.WBls:0000004.control_mean
16.3531From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002710.3807From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
11.1657From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.32083From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
7.95574From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.7732From_analysisRNASeq.briggsae.WBls:0000027.control_median
11.7324From_analysisRNASeq.briggsae.WBls:0000027.control_mean
23.0624From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003515.343From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003822.8242From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.32518From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
3.9984From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.77575From_analysisRNASeq.briggsae.WBls:0000038.control_median
9.55311From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
9.92522From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:00000410.739011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.07415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.15993From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.24571From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.7602From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.98192From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.36602From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.53102From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.48634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
4.659From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.17475From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.213847From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.470821From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.477567From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.574979From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.953439From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.5229From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.660643From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.57602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001013.9984From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.28871From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
4.14728From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.62023From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00134229
00134230
00134231
00134232
Ortholog (28)
Paralog (17)
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is an ortholog of C. elegans lin-39. In C. elegans, lin-39 is involved in several processes, including positive regulation of DNA-templated transcription; positive regulation of developmental process; and regulation of cell division.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG09167
Corresponding_CDS_historyCBG09167:bp194
Corresponding_transcriptCBG09167.1
Other_sequence (23)
Experimental_infoExpr_patternExpr1066080
Microarray_resultsGPL8303_CB6_WBGene00030808_A
GPL8303_CB6_WBGene00030808_B
GPL14143_CBG09167_394-453_0.936_2_C
GPL14143_CBG09167_512-571_0.922_9_B
GPL14143_CBG09167_563-622_0.931_7_A
InteractionWBInteraction000518852
WBInteraction000518874
WBInteraction000518875
ReferenceWBPaper00036467
WBPaper00039473
WBPaper00041660
MethodGene