WormBase Tree Display for Gene: WBGene00030440

WBGene00030440 SMap: S_parent: Sequence: cb25.fpc2051
  Identity: Version: 1
    Name: Sequence_name: CBG08691
      Molecular_name: CBG08691
        CBG08691.1
        CBP08013
      Other_name: CBG_08691 Accession_evidence: NDB HE601197
      Public_name: CBG08691
    DB_info: Database: NDB locus_tag CBG_08691
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:00 WBPerson1971 Event: Imported: Initial conversion from brigace
    Status: Live
  Gene_info: Biotype: SO:0001217
    RNASeq_FPKM: WBls:0000002 0.349334 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        31.7679 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        35.0918 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        59.8626 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        18.5245 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        1.95722 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        24.3152 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.33738 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.414645 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.49191 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        1.03077 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        2.26302 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.206935 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.413871 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.339589 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        0.45123 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.603838 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.898851 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 0.126766 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        0.424063 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        1.09978 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        1.44252 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        1.77549 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        3.57053 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        0.260795 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
        0.658147 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
      WBls:0000027 108.718 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        18.5033 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        70.3739 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        83.9005 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        176.774 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        495.975 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        96.3092 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
      WBls:0000035 3.55961 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 104.71 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        167.533 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        214.494 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        30.8786 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        5.93285 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        99.2058 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
      WBls:0000041 0.55726 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.640984 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        1.82828 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        1.97151 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        3.01557 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        3.67223 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.064696 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        1.40121 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        1.68536 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.16143 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        22.4848 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        24.7245 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        27.7668 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        32.6032 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        40.7679 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        21.1172 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        25.1258 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        3.08038 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 29.9085 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        3.57053 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.6393 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        36.176 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog (14)
    Paralog: WBGene00028827 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00030438 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00030439 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00031181 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00030446 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00041237 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00041238 Caenorhabditis briggsae From_analysis: Inparanoid_8
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1096) and Protein of unknown function DUF1096. Is an ortholog of C. elegans abu-15 and abu-6. In C. elegans, abu-6 is involved in pharynx development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG08691
    Corresponding_CDS_history: CBG08691:bp194
    Corresponding_transcript: CBG08691.1
  Experimental_info: Expr_pattern: Expr1051554
      Expr1069449
    Microarray_results: GPL8303_CB6_WBGene00030438_A
      GPL8303_CB6_WBGene00030440_A
      GPL14143_CBG08689_759-818_0.925_19_B
      GPL14143_CBG08689_1096-1155_0.894_51_A
      GPL14143_CBG08691_466-525_0.926_3_C
      GPL14143_CBG08691_540-599_0.934_2_B
      GPL14143_CBG08691_659-718_0.949_1_A
  Method: Gene