WormBase Tree Display for Gene: WBGene00030399

WBGene00030399 SMap: S_parent: Sequence: cb25.fpc2051
  Identity: Version: 2
    Name: CGC_name: Cbr-srr-5 From_analysis: Inferred_from_orthology
      Sequence_name: CBG08643
      Molecular_name: CBG08643
        CBG08643.1
        CBP31199
      Other_name: CBG_08643 Accession_evidence: NDB HE601197
      Public_name: Cbr-srr-5
    DB_info: Database: NDB locus_tag CBG_08643
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:00 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-srr-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: srr
    RNASeq_FPKM: WBls:0000002 0.034758 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.037193 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.067083 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.052138 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.057039 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.123879 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 0 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.55619 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        1.11238 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.164097 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        0.255295 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
      WBls:0000024 (12)
      WBls:0000027 0.058544 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.175633 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.087816 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        0.199462 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.622213 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0.074452 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.067844 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        0.070084 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        0.080744 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.091405 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        0.109887 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 0.011703 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.023406 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.039376 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.134097 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
            RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.052154 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.06664 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.080901 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        0.161436 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.085859 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.429295 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.062391 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        0.081948 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 0.023406 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.118369 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.049792 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.122306 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Contained_in_operon: CBOPA0274
    Ortholog (27)
    Paralog: WBGene00042082 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00030401 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00031026 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00030400 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00030397 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030398 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039506 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Caenorhabditis protein of unknown function, DUF267 and Protein of unknown function DUF267, Caenorhabditis species. Is an ortholog of C. elegans srr-5. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG08643
    Corresponding_CDS_history: CBG08643:bp194
    Corresponding_transcript: CBG08643.1
  Experimental_info: Expr_pattern: Expr1061838
    Microarray_results: GPL8303_CB6_WBGene00030399_A
      GPL8303_CB6_WBGene00030399_B
      GPL14143_CBG08643_1060-1119_0.952_1_A
  Method: Gene