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WormBase Tree Display for Gene: WBGene00030398

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Name Class

WBGene00030398SMapS_parentSequencecb25.fpc2051
IdentityVersion1
NameSequence_nameCBG08642
Molecular_nameCBG08642
CBG08642.1
CBP39254
Other_nameCBG_08642Accession_evidenceNDBHE601197
Public_nameCBG08642
DB_infoDatabaseNDBlocus_tagCBG_08642
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:00WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000021.41228From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.644From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.71165From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.07867From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.00177From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.52814From_analysisRNASeq.briggsae.WBls:0000002.control_median
1.53418From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.132868From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.398603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
0.01303From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.065151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (11)
WBls:00000270.210899From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0.632698From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.316349From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.355661From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0.789945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000352.97746From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.26504From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.47215From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
1.86061From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.24906From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.36329From_analysisRNASeq.briggsae.WBls:0000038.control_mean
9.46692From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.421556From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.443641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.448891From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.454142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.541232From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.845587From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.64129From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.642455From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.828439From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
0.861366From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.348536From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.408848From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.529376From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.16633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.438956From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.586545From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.47503From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.454142From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.04434From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.491759From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.939633From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (26)
ParalogWBGene00030397Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00039506Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00030399Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030400Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030401Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031026Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042082Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Caenorhabditis protein of unknown function, DUF267 and Protein of unknown function DUF267, Caenorhabditis species. Is an ortholog of C. elegans srr-7.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08642
Corresponding_CDS_historyCBG08642:bp194
CBG08642:bp255
Corresponding_transcriptCBG08642.1
Other_sequenceCBC03183_1
Experimental_infoExpr_patternExpr1051123
Microarray_resultsGPL8303_CB6_WBGene00030398_A
GPL8303_CB6_WBGene00030398_B
GPL14143_CBG08642_1073-1132_0.962_1_A
MethodGene