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WormBase Tree Display for Gene: WBGene00030374

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Name Class

WBGene00030374SMapS_parentSequencecb25.fpc2051
IdentityVersion2
NameCGC_nameCbr-let-413From_analysisInferred_from_orthology
Sequence_nameCBG08615
Molecular_nameCBG08615a
CBG08615a.1
CBP36243
CBG08615b
CBP45612
CBG08615c
CBP39773
CBG08615b.1
CBG08615c.1
Other_nameCBG_08615Accession_evidenceNDBHE601197
Public_nameCbr-let-413
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-let-413
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlet
RNASeq_FPKMWBls:000000233.5839From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
35.5817From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
39.5511From_analysisRNASeq.briggsae.WBls:0000002.control_mean
49.4878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
38.7051From_analysisRNASeq.briggsae.WBls:0000002.control_median
40.1204From_analysisRNASeq.briggsae.WBls:0000002.control_mean
41.8284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003105.305From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
106.177From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
107.05From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
103.809From_analysisRNASeq.briggsae.WBls:0000003.control_mean
99.0722From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:0000004176.201From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
178.484From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
180.766From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
172.774From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
178.903From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
179.609From_analysisRNASeq.briggsae.WBls:0000004.control_mean
189.401From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002713.2428From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
20.6899From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.38347From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
44.4435From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
25.4601From_analysisRNASeq.briggsae.WBls:0000027.control_mean
26.5068From_analysisRNASeq.briggsae.WBls:0000027.control_median
39.7708From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003543.3874From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.1375From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
29.7776From_analysisRNASeq.briggsae.WBls:0000038.control_mean
34.669From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
34.9013From_analysisRNASeq.briggsae.WBls:0000038.control_median
35.1337From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
38.1701From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004133.3315From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
53.9252From_analysisRNASeq.briggsae.WBls:0000041.control_mean
58.6197From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
59.0218From_analysisRNASeq.briggsae.WBls:0000041.control_median
59.4239From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
64.3257From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
29.1836From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
35.9323From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
46.8028From_analysisRNASeq.briggsae.WBls:0000041.control_mean
47.276From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
25.3888From_analysisRNASeq.briggsae.WBls:0000063.control_mean
29.305From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
30.3264From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
31.8924From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
35.4202From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
23.3208From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
25.0441From_analysisRNASeq.briggsae.WBls:0000063.control_mean
29.8157From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010138.1701From_analysisRNASeq.briggsae.total_over_all_stages.control_median
49.8393From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
39.6799From_analysisRNASeq.briggsae.total_over_all_stages.control_median
59.356From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (38)
ParalogWBGene00025363Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027566Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039104Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039205Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039975Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Leucine-rich repeat; Leucine-rich repeat domain superfamily; Leucine rich repeat; and Leucine-rich repeat, typical subtype. Is an ortholog of C. elegans let-413. In C. elegans, let-413 is involved in several processes, including adherens junction assembly; embryonic digestive tract morphogenesis; and maintenance of epithelial cell apical/basal polarity.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08615a
CBG08615b
CBG08615c
Corresponding_CDS_historyCBG08615:bp194
Corresponding_transcriptCBG08615a.1
CBG08615b.1
CBG08615c.1
Other_sequence (16)
Experimental_infoExpr_patternExpr1053247
Microarray_resultsGPL8303_CB6_WBGene00030374_A
GPL14143_CBG08615_1066-1125_0.868_20_C
GPL14143_CBG08615_1240-1299_0.825_52_A
GPL14143_CBG08615_1448-1507_0.918_10_B
MethodGene