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WormBase Tree Display for Gene: WBGene00030043

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Name Class

WBGene00030043SMapS_parentSequencecb25.fpc1417
IdentityVersion2
NameCGC_nameCbr-irx-1From_analysisInferred_from_orthology
Sequence_nameCBG08197
Molecular_nameCBG08197a
CBG08197a.1
CBP26422
CBG08197b
CBP46529
CBG08197b.1
Other_nameCBG_08197Accession_evidenceNDBHE601064
Public_nameCbr-irx-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-irx-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classirx
RNASeq_FPKMWBls:00000025.47424From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
7.75175From_analysisRNASeq.briggsae.WBls:0000002.control_mean
8.3046From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
9.47642From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
4.22008From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
6.86883From_analysisRNASeq.briggsae.WBls:0000002.control_mean
6.88942From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000332.0008From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
35.734From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
39.4672From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
29.7253From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
33.7311From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000465.7926From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
65.9267From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
66.0608From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
62.4818From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
68.5808From_analysisRNASeq.briggsae.WBls:0000004.control_mean
72.397From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
76.1718From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002714.8966From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.39485From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
5.86326From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
7.71824From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.3799From_analysisRNASeq.briggsae.WBls:0000027.control_median
16.0021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
9.7892From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003512.7238From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003815.5796From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.17428From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
6.48744From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
7.38571From_analysisRNASeq.briggsae.WBls:0000038.control_median
8.28398From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
8.38132From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:00000411.99289From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.20473From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.42407From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.64342From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.36815From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.63155From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.01355From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.38368From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
3.62597From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.89956From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000631.69782From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.5784From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.74705From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.61841From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.06055From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
6.00823From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
3.19102From_analysisRNASeq.briggsae.WBls:0000063.control_median
3.62117From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.63498From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010114.1339From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
6.63155From_analysisRNASeq.briggsae.total_over_all_stages.control_median
17.9684From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.45777From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00133449
00133450
00133451
Contained_in_operonCBOPA0181
Ortholog (31)
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is an ortholog of C. elegans irx-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08197a
CBG08197b
Corresponding_CDS_historyCBG08197:bp194
Corresponding_transcriptCBG08197a.1
CBG08197b.1
Other_sequence (11)
Experimental_infoExpr_patternExpr1064148
Microarray_resultsGPL8303_CB6_WBGene00030043_A
GPL8303_CB6_WBGene00030043_B
GPL8303_CB6_WBGene00030043_C
GPL8303_CB6_WBGene00030043_D
GPL8303_CB6_WBGene00030043_E
GPL14143_CBG08197_328-387_0.877_29_C
GPL14143_CBG08197_529-588_0.870_38_B
GPL14143_CBG08197_793-852_0.911_11_A
ReferenceWBPaper00030889
MethodGene