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WormBase Tree Display for Gene: WBGene00029397

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Name Class

WBGene00029397SMapS_parentSequencecb25.fpc0829
IdentityVersion2
NameCGC_nameCbr-lgc-21From_analysisInferred_from_orthology
Sequence_nameCBG07310
Molecular_nameCBG07310
CBG07310.1
CBP15890
Other_nameCBG_07310Accession_evidenceNDBHE601041
Public_nameCbr-lgc-21
DB_infoDatabaseNDBlocus_tagCBG_07310
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lgc-21
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlgc
RNASeq_FPKMWBls:000000222.5212From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
26.3266From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
27.3611From_analysisRNASeq.briggsae.WBls:0000002.control_mean
33.2356From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
11.6295From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
23.4282From_analysisRNASeq.briggsae.WBls:0000002.control_mean
24.4239From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000031.81086From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
2.81641From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
3.82195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
3.41727From_analysisRNASeq.briggsae.WBls:0000003.control_mean
4.61901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000410.5933From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
12.5496From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
14.5059From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
10.6431From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
12.7637From_analysisRNASeq.briggsae.WBls:0000004.control_mean
14.0349From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
14.0414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:0000027114.845From_analysisRNASeq.briggsae.WBls:0000027.control_mean
15.2659From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
280.627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
48.641From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
117.219From_analysisRNASeq.briggsae.WBls:0000027.control_mean
124.341From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
86.491From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:00000352.727From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003827.8317From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
38.8459From_analysisRNASeq.briggsae.WBls:0000038.control_median
42.5573From_analysisRNASeq.briggsae.WBls:0000038.control_mean
49.86From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
8.37272From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
84.1646From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004119.8285From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.15171From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.97948From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
5.65672From_analysisRNASeq.briggsae.WBls:0000041.control_median
7.33397From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
8.57341From_analysisRNASeq.briggsae.WBls:0000041.control_mean
12.9763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.67634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
8.49105From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006311.9122From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
7.966From_analysisRNASeq.briggsae.WBls:0000063.control_mean
8.74753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
9.25697From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
9.91332From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
6.14109From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
7.66185From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.00225From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010124.6684From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
9.25697From_analysisRNASeq.briggsae.total_over_all_stages.control_median
10.2533From_analysisRNASeq.briggsae.total_over_all_stages.control_median
24.1444From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00132813
00132814
00132815
00132816
00132817
00132818
Contained_in_operonCBOPA0738
Ortholog (28)
Paralog (104)
Structured_descriptionAutomated_descriptionPredicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-21.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07310
Corresponding_CDS_historyCBG07310:bp194
CBG07310:bp255
Corresponding_transcriptCBG07310.1
Other_sequence (13)
Experimental_infoExpr_patternExpr1056939
Microarray_resultsGPL8303_CB6_WBGene00029397_A
GPL8303_CB6_WBGene00029397_B
GPL14143_CBG07310_1012-1071_0.679_67_B
GPL14143_CBG07310_1105-1164_0.698_58_C
GPL14143_CBG07310_1243-1302_0.821_2_A
Expression_clusterWBPaper00058955:heatshock_upregulated_CBG
MethodGene