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WormBase Tree Display for Gene: WBGene00029270

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Name Class

WBGene00029270SMapS_parentSequencecb25.fpc0305b
IdentityVersion2
NameCGC_nameCbr-alh-6From_analysisInferred_from_orthology
Sequence_nameCBG07110
Molecular_nameCBG07110
CBG07110.1
CBP01802
Other_nameCBG_07110Accession_evidenceNDBHE600957
Public_nameCbr-alh-6
DB_infoDatabaseNDBlocus_tagCBG_07110
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-alh-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classalh
RNASeq_FPKMWBls:000000256.3501From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
60.2355From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
60.4988From_analysisRNASeq.briggsae.WBls:0000002.control_mean
64.9108From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
33.7513From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
53.8119From_analysisRNASeq.briggsae.WBls:0000002.control_mean
58.2928From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000034.63836From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
5.29418From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
5.95From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
6.56313From_analysisRNASeq.briggsae.WBls:0000003.control_mean
9.10103From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000415.2035From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
17.0576From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
18.9117From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
14.8926From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
17.5741From_analysisRNASeq.briggsae.WBls:0000004.control_mean
18.2211From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
20.6415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002723.2663From_analysisRNASeq.briggsae.WBls:0000027.control_mean
23.5024From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
38.6607From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
7.63574From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
31.0816From_analysisRNASeq.briggsae.WBls:0000027.control_median
33.9311From_analysisRNASeq.briggsae.WBls:0000027.control_mean
65.9256From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003556.9456From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003836.8805From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
56.5976From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
60.5894From_analysisRNASeq.briggsae.WBls:0000038.control_mean
61.8933From_analysisRNASeq.briggsae.WBls:0000038.control_median
67.1891From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
81.6902From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041110.688From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
53.6142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
65.4553From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
69.2814From_analysisRNASeq.briggsae.WBls:0000041.control_median
73.1075From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
75.7162From_analysisRNASeq.briggsae.WBls:0000041.control_mean
117.443From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
119.663From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
89.9952From_analysisRNASeq.briggsae.WBls:0000041.control_mean
91.8978From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006359.4623From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
60.985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
61.4204From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
62.7036From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
66.9652From_analysisRNASeq.briggsae.WBls:0000063.control_mean
90.2546From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
62.062From_analysisRNASeq.briggsae.WBls:0000063.control_median
67.127From_analysisRNASeq.briggsae.WBls:0000063.control_mean
67.9362From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010151.8692From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
59.4623From_analysisRNASeq.briggsae.total_over_all_stages.control_median
51.889From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
58.2039From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00132726
00132727
00132728
00132729
Contained_in_operonCBOPA0754
Ortholog (35)
ParalogWBGene00026057Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028333Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030737Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030825Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032202Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035529Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038231Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039697Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041442Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable 1-pyrroline-5-carboxylate dehydrogenase activity. Predicted to be involved in proline catabolic process to glutamate. Is an ortholog of C. elegans alh-6.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07110
Corresponding_CDS_historyCBG07110:bp194
Corresponding_transcriptCBG07110.1
Other_sequence (71)
Experimental_infoExpr_patternExpr1069755
Microarray_resultsGPL8303_CB6_WBGene00029270_A
GPL8303_CB6_WBGene00029270_B
GPL14143_CBG07110_881-940_0.782_11_C
GPL14143_CBG07110_1048-1107_0.792_4_B
GPL14143_CBG07110_1516-1575_0.642_103_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene