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WormBase Tree Display for Gene: WBGene00029075

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Name Class

WBGene00029075SMapS_parentSequencecb25.fpc0201
IdentityVersion2
NameCGC_nameCbr-lin-9From_analysisInferred_from_orthology
Sequence_nameCBG06880
Molecular_nameCBG06880
CBG06880.1
CBP40439
Other_nameCBG_06880Accession_evidenceNDBHE601347
Public_nameCbr-lin-9
DB_infoDatabaseNDBlocus_tagCBG_06880
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lin-9
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
AlleleWBVar00111853
WBVar00007019
WBVar00111854
WBVar00111855
WBVar00111856
WBVar00007024
RNASeq_FPKMWBls:000000221.1901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
24.7908From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
26.2628From_analysisRNASeq.briggsae.WBls:0000002.control_mean
32.8075From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
28.7992From_analysisRNASeq.briggsae.WBls:0000002.control_median
30.0164From_analysisRNASeq.briggsae.WBls:0000002.control_mean
41.2771From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003104.411From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
108.925From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
99.8974From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
109.991From_analysisRNASeq.briggsae.WBls:0000003.control_mean
121.151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000466.057From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
70.7802From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
75.5034From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
64.5687From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
66.8457From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
69.4819From_analysisRNASeq.briggsae.WBls:0000004.control_mean
74.4349From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.948098From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
17.001From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.25386From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
6.73432From_analysisRNASeq.briggsae.WBls:0000027.control_mean
13.6587From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
7.95628From_analysisRNASeq.briggsae.WBls:0000027.control_median
8.46541From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003512.6726From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.4172From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
10.7613From_analysisRNASeq.briggsae.WBls:0000038.control_median
11.1055From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
13.1142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.11987From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
9.68919From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:000004111.317From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
43.0457From_analysisRNASeq.briggsae.WBls:0000041.control_mean
50.6425From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
52.6315From_analysisRNASeq.briggsae.WBls:0000041.control_median
54.6205From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
55.603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
13.0391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
13.2421From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
31.9423From_analysisRNASeq.briggsae.WBls:0000041.control_median
33.0774From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006320.4012From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
22.0492From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
23.4484From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
23.6429From_analysisRNASeq.briggsae.WBls:0000063.control_mean
25.8452From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
26.4704From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
22.0292From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
22.7488From_analysisRNASeq.briggsae.WBls:0000063.control_median
23.3739From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010120.4012From_analysisRNASeq.briggsae.total_over_all_stages.control_median
29.419From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
21.6096From_analysisRNASeq.briggsae.total_over_all_stages.control_median
33.7736From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00132524
00132525
Ortholog (30)
Structured_descriptionAutomated_descriptionPredicted to be involved in DNA-templated transcription. Predicted to be part of transcription repressor complex. Is an ortholog of C. elegans lin-9. In C. elegans, lin-9 is involved in embryo development; male sex differentiation; and regulation of multicellular organismal development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG06880
Corresponding_CDS_historyCBG06880:bp194
CBG06880:bp255
Corresponding_transcriptCBG06880.1
Other_sequence (11)
Experimental_infoExpr_patternExpr1063237
Microarray_resultsGPL8303_CB6_WBGene00029075_A
GPL14143_CBG06880_990-1049_0.886_37_B
GPL14143_CBG06880_1132-1191_0.903_30_A
GPL14143_CBG06880_1391-1450_0.637_246_C
MethodGene