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WormBase Tree Display for Gene: WBGene00028285

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Name Class

WBGene00028285SMapS_parentSequencecb25.fpc0143a
IdentityVersion2
NameCGC_nameCbr-nep-16From_analysisInferred_from_orthology
Sequence_nameCBG05928
Molecular_nameCBG05928a
CBG05928a.1
CBP42755
CBG05928b
CBP44500
CBG05928b.1
Other_nameCBG_05928Accession_evidenceNDBHE600909
Public_nameCbr-nep-16
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
210 Feb 2012 15:52:43WBPerson2970Name_changeCGC_nameCbr-nep-16
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnep
AlleleWBVar00111163
WBVar00111164
WBVar00012424
RNASeq_FPKMWBls:00000020.472836From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.35969From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.36133From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.25145From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.480772From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.920231From_analysisRNASeq.briggsae.WBls:0000002.control_median
1.14119From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.441452From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.2318From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.02214From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
1.55697From_analysisRNASeq.briggsae.WBls:0000003.control_mean
2.20732From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000413.193From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
13.3272From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
13.4613From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
12.592From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
13.1558From_analysisRNASeq.briggsae.WBls:0000004.control_mean
13.2261From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
13.3064From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.342185From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.712414From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
15.5347From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.52977From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.83165From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.95089From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
5.38505From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000354.24475From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.198837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.96989From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.07655From_analysisRNASeq.briggsae.WBls:0000038.control_mean
2.10137From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.23284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3.90462From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.14642From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.237723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.289589From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.341455From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.362125From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.7229From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.463678From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.49457From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.647686From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
0.685883From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.174513From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.277599From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.447023From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.508567From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.546142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.09756From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.051392From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.362311From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.432371From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001010.7229From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.5915From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.845047From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.24479From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00131734
00131735
00131736
Ortholog (29)
Paralog (27)
Structured_descriptionAutomated_descriptionPredicted to enable metalloendopeptidase activity. Predicted to be involved in proteolysis. Is an ortholog of C. elegans nep-16.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG05928a
CBG05928b
Corresponding_CDS_historyCBG05928:bp194
CBG05928:bp255
Corresponding_transcriptCBG05928a.1
CBG05928b.1
Other_sequenceHBC15480_1
ES410644.1
Experimental_infoExpr_patternExpr1054131
Microarray_resultsGPL8303_CB6_WBGene00028285_A
GPL8303_CB6_WBGene00028285_B
GPL14143_CBG05928_2476-2535_0.914_20_C
GPL14143_CBG05928_2784-2843_0.952_7_B
GPL14143_CBG05928_2851-2910_0.958_4_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
ReferenceWBPaper00040789
MethodGene