WormBase Tree Display for Gene: WBGene00028247

WBGene00028247 SMap: S_parent: Sequence: cb25.fpc0143a
  Identity: Version: 1
    Name: Sequence_name: CBG05884
      Molecular_name: CBG05884
        CBG05884.1
        CBP07161
      Other_name: CBG_05884 Accession_evidence: NDB HE600909
      Public_name: CBG05884
    DB_info: Database: NDB locus_tag CBG_05884
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:57 WBPerson1971 Event: Imported: Initial conversion from brigace
    Status: Live
  Gene_info: Biotype: SO:0001217
    RNASeq_FPKM: WBls:0000002 3.08744 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        4.53912 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        5.10851 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        5.42142 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        4.68911 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        5.12378 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        5.13905 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 3.13162 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        4.9077 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        6.68379 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        5.8671 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        7.78589 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 10.0119 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        10.4095 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        10.8072 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        13.6936 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        15.2711 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        22.4879 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        9.88985 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 11.4945 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        1.56767 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
        3.56699 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        7.05019 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        7.09868 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        7.56929 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        8.03991 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        4.9042 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
        8.35356 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
      WBls:0000027 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        2.70538 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.80979 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        5.30635 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        2.80947 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.96577 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        3.12175 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 8.31975 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.52424 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        12.083 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        2.83907 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        3.75848 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        4.67788 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        5.03105 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
      WBls:0000041 10.4825 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        12.8755 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        14.7469 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        15.2684 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        24.8963 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        8.34018 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        15.6335 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        15.9933 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        15.9986 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        20.9739 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 16.9012 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        18.0032 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        19.161 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        2.2321 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        25.8714 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        73.0593 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        17.4522 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        22.6215 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        6.37191 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 10.2537 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        7.09868 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        10.642 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        7.9129 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00131685
      00131686
      00131687
      00131688
    Ortholog (93)
    Paralog: WBGene00024732 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028216 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028219 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028398 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032089 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038550 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041797 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041801 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041804 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00088321 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be part of nucleosome. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG05884
    Corresponding_CDS_history: CBG05884:bp194
    Corresponding_transcript: CBG05884.1
    Other_sequence (35)
  Experimental_info: Microarray_results: GPL8303_CB6_WBGene00028247_A
  Method: Gene