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WormBase Tree Display for Gene: WBGene00028104

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Name Class

WBGene00028104SMapS_parentSequencecb25.fpc0143a
IdentityVersion2
NameCGC_nameCbr-lip-1From_analysisInferred_from_orthology
Sequence_nameCBG05704
Molecular_nameCBG05704
CBG05704.1
CBP37663
Other_nameCBG_05704Accession_evidenceNDBHE600909
Public_nameCbr-lip-1
DB_infoDatabaseNDBlocus_tagCBG_05704
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lip-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlip
AlleleWBVar00136431
RNASeq_FPKMWBls:000000247.3096From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
48.7619From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
52.6708From_analysisRNASeq.briggsae.WBls:0000002.control_mean
61.941From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
108.772From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
55.3515From_analysisRNASeq.briggsae.WBls:0000002.control_median
66.6961From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000034.83725From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
5.24174From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
5.64624From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
5.8559From_analysisRNASeq.briggsae.WBls:0000003.control_mean
7.08422From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000410.9377From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
12.9133From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
14.8889From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
10.2746From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
11.495From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
12.2616From_analysisRNASeq.briggsae.WBls:0000004.control_mean
13.712From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.0014From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.1572From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
22.6058From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
8.24111From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
14.796From_analysisRNASeq.briggsae.WBls:0000027.control_mean
15.4235From_analysisRNASeq.briggsae.WBls:0000027.control_median
26.1799From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003525.7564From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.1251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
14.6881From_analysisRNASeq.briggsae.WBls:0000038.control_mean
15.2675From_analysisRNASeq.briggsae.WBls:0000038.control_median
16.4099From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
22.9917From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
5.22557From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:0000041155.232From_analysisRNASeq.briggsae.WBls:0000041.control_mean
175.972From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
181.831From_analysisRNASeq.briggsae.WBls:0000041.control_median
187.691From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
196.195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
61.0701From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
127.751From_analysisRNASeq.briggsae.WBls:0000041.control_mean
130.184From_analysisRNASeq.briggsae.WBls:0000041.control_median
61.1829From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
84.3958From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006342.0119From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
46.0789From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
51.6685From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
53.6787From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
54.7596From_analysisRNASeq.briggsae.WBls:0000063.control_mean
80.3602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
38.2151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
48.8737From_analysisRNASeq.briggsae.WBls:0000063.control_median
52.0022From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010130.6049From_analysisRNASeq.briggsae.total_over_all_stages.control_median
45.8198From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
28.3924From_analysisRNASeq.briggsae.total_over_all_stages.control_median
44.4759From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00131518
Ortholog (30)
ParalogWBGene00023699Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00023921Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00025434Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026563Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031447Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035157Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035822Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00087806Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable phosphatase activity. Is an ortholog of C. elegans lip-1. In C. elegans, lip-1 is involved in several processes, including negative regulation of Ras protein signal transduction; positive regulation of vulval development; and vulval cell fate specification.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG05704
Corresponding_CDS_historyCBG05704:bp194
CBG05704:bp213
Corresponding_transcriptCBG05704.1
Other_sequence (19)
Experimental_infoExpr_patternExpr1058178
Microarray_resultsGPL8303_CB6_WBGene00028104_A
GPL8303_CB6_WBGene00028104_B
GPL14143_CBG05704_533-592_0.916_6_C
GPL14143_CBG05704_630-689_0.923_4_B
GPL14143_CBG05704_778-837_0.910_7_A
MethodGene