Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00027976

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00027976SMapS_parentSequencecb25.fpc0129
IdentityVersion3
NameCGC_nameCbr-pbo-5From_analysisInferred_from_orthology
Sequence_nameCBG05548
Molecular_nameCBG05548
CBG05548.1
CBP31028
Other_nameCbr-lgc-2From_analysisInferred_from_orthology
CBG_05548Accession_evidenceNDBHE601419
Public_nameCbr-pbo-5
DB_infoDatabaseNDBlocus_tagCBG_05548
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lgc-2
301 Feb 2008 14:44:54WBPerson2970Name_changeCGC_nameCbr-pbo-5
Other_nameCbr-lgc-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpbo
Allele (12)
RNASeq_FPKMWBls:000000211.1594From_analysisRNASeq.briggsae.WBls:0000002.control_mean
19.3271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
6.31015From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
7.84082From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
6.0039From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
7.07549From_analysisRNASeq.briggsae.WBls:0000002.control_median
9.87049From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.271127From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.542253From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.302308From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.364672From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000047.37629From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
7.3955From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
7.41471From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
5.31622From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
5.44384From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
6.46397From_analysisRNASeq.briggsae.WBls:0000004.control_mean
6.76879From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.709987From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.62364From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.03042From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.75762From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.42249From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.69063From_analysisRNASeq.briggsae.WBls:0000027.control_median
9.59873From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000358.56125From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.6874From_analysisRNASeq.briggsae.WBls:0000038.control_median
11.6369From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
13.7268From_analysisRNASeq.briggsae.WBls:0000038.control_mean
30.3285From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3.204From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
9.73784From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004110.289From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.76989From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.0738From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.22076From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.36771From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
4.8751From_analysisRNASeq.briggsae.WBls:0000041.control_mean
10.2859From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
5.09017From_analysisRNASeq.briggsae.WBls:0000041.control_median
6.09982From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.81263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000631.89514From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.31482From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.86714From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
3.32824From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
3.48359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.6352From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.09769From_analysisRNASeq.briggsae.WBls:0000063.control_median
4.2371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001016.31015From_analysisRNASeq.briggsae.total_over_all_stages.control_median
6.74168From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
6.15702From_analysisRNASeq.briggsae.total_over_all_stages.control_median
6.58791From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00131392
00131393
00131394
00131395
00131396
00131397
Ortholog (26)
Paralog (104)
Structured_descriptionAutomated_descriptionPredicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans pbo-5. In C. elegans, pbo-5 is involved in defecation; lipid transport involved in lipid storage; and positive regulation of multicellular organismal process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG05548
Corresponding_CDS_historyCBG05548:bp194
Corresponding_transcriptCBG05548.1
Other_sequenceTcir_isotig28238
OVC02881_1
Tcol_isotig20449
Oden_isotig15669
DN152828.1
Tcol_isotig18805
HBC02982_1
Experimental_infoExpr_patternExpr1051675
Microarray_resultsGPL8303_CB6_WBGene00027976_A
GPL8303_CB6_WBGene00027976_B
GPL14143_CBG05548_674-733_0.885_10_C
GPL14143_CBG05548_756-815_0.869_19_B
GPL14143_CBG05548_1018-1077_0.920_3_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene