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WormBase Tree Display for Gene: WBGene00027754

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Name Class

WBGene00027754SMapS_parentSequencecb25.fpc0106
IdentityVersion2
NameCGC_nameCbr-skr-20From_analysisInferred_from_orthology
Sequence_nameCBG05259
Molecular_nameCBG05259
CBG05259.1
CBP07022
Other_nameCBG_05259Accession_evidenceNDBHE601042
Public_nameCbr-skr-20
DB_infoDatabaseNDBlocus_tagCBG_05259
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-skr-20
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classskr
RNASeq_FPKMWBls:000000211.2538From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
16.4275From_analysisRNASeq.briggsae.WBls:0000002.control_mean
18.8927From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
19.1359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
13.2116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
15.6235From_analysisRNASeq.briggsae.WBls:0000002.control_mean
16.0522From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000313.9664From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
26.3232From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
38.6799From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
20.1943From_analysisRNASeq.briggsae.WBls:0000003.control_mean
7.93657From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000456.2198From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
59.6499From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
63.0801From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
50.2223From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
61.355From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
64.5131From_analysisRNASeq.briggsae.WBls:0000004.control_mean
91.6885From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.772454From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
19.9576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.16759From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
7.96588From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.1558From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.5626From_analysisRNASeq.briggsae.WBls:0000027.control_median
20.7254From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003516.697From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.9086From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
14.0838From_analysisRNASeq.briggsae.WBls:0000038.control_mean
14.6194From_analysisRNASeq.briggsae.WBls:0000038.control_median
16.3301From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
19.21From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
7.88667From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004112.4226From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
15.4482From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
16.6158From_analysisRNASeq.briggsae.WBls:0000041.control_median
17.3532From_analysisRNASeq.briggsae.WBls:0000041.control_mean
17.7834From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
23.7587From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
20.771From_analysisRNASeq.briggsae.WBls:0000041.control_median
23.7942From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
23.7962From_analysisRNASeq.briggsae.WBls:0000041.control_mean
49.5698From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006311.2893From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
4.30374From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
4.8054From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
5.25477From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.87543From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
11.703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
5.34042From_analysisRNASeq.briggsae.WBls:0000063.control_median
6.32948From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010116.3301From_analysisRNASeq.briggsae.total_over_all_stages.control_median
17.7143From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
17.2402From_analysisRNASeq.briggsae.total_over_all_stages.control_median
22.2085From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00131202
Ortholog (67)
Paralog (18)
Structured_descriptionAutomated_descriptionPredicted to be involved in ubiquitin-dependent protein catabolic process. Is an ortholog of C. elegans skr-20.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG05259
Corresponding_CDS_historyCBG05259:bp194
Corresponding_transcriptCBG05259.1
Other_sequenceCBC00224_1
Experimental_infoExpr_patternExpr1061445
Microarray_resultsGPL8303_CB6_WBGene00027754_A
GPL8303_CB6_WBGene00027754_B
GPL14143_CBG05259_432-491_0.559_103_A
Expression_clusterWBPaper00058955:heatshock_upregulated_CBG
MethodGene