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WormBase Tree Display for Gene: WBGene00027359

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Name Class

WBGene00027359SMapS_parentSequencecb25.fpc0090
IdentityVersion2
NameCGC_nameCbr-trm-1From_analysisInferred_from_orthology
Sequence_nameCBG04743
Molecular_nameCBG04743
CBG04743.1
CBP42386
Other_nameCBG_04743Accession_evidenceNDBHE601135
Public_nameCbr-trm-1
DB_infoDatabaseNDBlocus_tagCBG_04743
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-trm-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtrm
RNASeq_FPKMWBls:000000219.8333From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
26.2589From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
27.1394From_analysisRNASeq.briggsae.WBls:0000002.control_mean
35.326From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
28.2323From_analysisRNASeq.briggsae.WBls:0000002.control_mean
28.885From_analysisRNASeq.briggsae.WBls:0000002.control_median
31.5111From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000340.115From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
46.5419From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
52.9688From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
47.8023From_analysisRNASeq.briggsae.WBls:0000003.control_mean
50.3231From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000430.1149From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
31.5882From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
33.0615From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
31.9711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
32.4495From_analysisRNASeq.briggsae.WBls:0000004.control_mean
32.8245From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
34.2753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.03592From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
20.9043From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.08813From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
9.00945From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.0639From_analysisRNASeq.briggsae.WBls:0000027.control_mean
13.2272From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
9.15767From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003514.5158From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.6054From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
12.4952From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
15.4227From_analysisRNASeq.briggsae.WBls:0000038.control_median
18.3502From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
18.8817From_analysisRNASeq.briggsae.WBls:0000038.control_mean
33.0761From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004121.4087From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
40.1616From_analysisRNASeq.briggsae.WBls:0000041.control_mean
42.2855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
45.0559From_analysisRNASeq.briggsae.WBls:0000041.control_median
47.8263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
49.1259From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
22.8337From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
31.7418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
35.8703From_analysisRNASeq.briggsae.WBls:0000041.control_mean
37.0136From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
20.3179From_analysisRNASeq.briggsae.WBls:0000063.control_mean
23.4923From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
24.4636From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
26.5144From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
27.1191From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
22.0854From_analysisRNASeq.briggsae.WBls:0000063.control_mean
25.489From_analysisRNASeq.briggsae.WBls:0000063.control_median
30.9229From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010123.4923From_analysisRNASeq.briggsae.total_over_all_stages.control_median
23.9208From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
25.614From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
25.8326From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00130922
00130923
00130924
Contained_in_operonCBOPA0632
Ortholog (32)
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity and tRNA (guanine-N2-)-methyltransferase activity. Predicted to be involved in tRNA processing. Is an ortholog of C. elegans trm-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04743
Corresponding_CDS_historyCBG04743:bp194
CBG04743:bp255
Corresponding_transcriptCBG04743.1
Other_sequence (43)
Experimental_infoExpr_patternExpr1061889
Microarray_resultsGPL8303_CB6_WBGene00027359_A
GPL8303_CB6_WBGene00027359_B
GPL14143_CBG04743_1272-1331_0.945_11_C
GPL14143_CBG04743_1460-1519_0.960_2_A
GPL14143_CBG04743_1508-1567_0.964_1_B
MethodGene