WormBase Tree Display for Gene: WBGene00027161

WBGene00027161 SMap: S_parent: Sequence: cb25.fpc0083
  Identity: Version: 2
    Name: CGC_name: Cbr-sdn-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG04505
      Molecular_name: CBG04505
        CBG04505.1
        CBP33703
      Other_name: CBG_04505 Accession_evidence: NDB HE601277
      Public_name: Cbr-sdn-1
    DB_info: Database: NDB locus_tag CBG_04505
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:56 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:05 WBPerson2970 Name_change: CGC_name: Cbr-sdn-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sdn
    RNASeq_FPKM: WBls:0000002 38.7427 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        43.1489 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        46.6802 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        58.1491 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        31.7869 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        40.9458 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        42.9569 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 154.302 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        183.473 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        212.645 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        166.026 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        177.658 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 296.872 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        315.627 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        334.382 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        293.904 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        308.189 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        319.18 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        362.553 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 19.4098 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        54.1601 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        61.6978 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        81.3726 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        50.1517 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        53.158 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        55.9248 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
      WBls:0000035 54.6878 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 37.6108 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        42.4729 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        43.6521 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        44.3834 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        46.294 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        48.2309 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 20.7992 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        21.0827 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        21.3302 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        21.5011 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        21.5776 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        22.5448 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        17.992 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        21.3473 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        24.0876 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 10.1704 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        10.8711 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        10.9723 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        7.62697 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        7.92815 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        10.5208 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        11.0757 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        26.8134 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 43.1489 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        68.2059 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        44.7215 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        85.7757 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00130770
    Ortholog (28)
    Structured_description: Automated_description: Predicted to be located in membrane. Is an ortholog of C. elegans sdn-1. In C. elegans, sdn-1 is involved in embryo development; epidermis morphogenesis; and nematode larval development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG04505
    Corresponding_CDS_history: CBG04505:bp194
    Corresponding_transcript: CBG04505.1
    Other_sequence (18)
  Experimental_info: Expr_pattern: Expr1065715
    Microarray_results: GPL8303_CB6_WBGene00027161_A
      GPL8303_CB6_WBGene00027161_B
      GPL14143_CBG04505_603-662_0.704_58_C
      GPL14143_CBG04505_787-846_0.819_16_B
      GPL14143_CBG04505_852-911_0.875_1_A
  Method: Gene