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WormBase Tree Display for Gene: WBGene00026848

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Name Class

WBGene00026848SMapS_parentSequencecb25.fpc0071f
IdentityVersion2
NameCGC_nameCbr-lin-17From_analysisInferred_from_orthology
Sequence_nameCBG04112
Molecular_nameCBG04112a
CBG04112a.1
CBP27124
CBG04112b
CBP46592
CBG04112b.1
Other_nameCBG_04112Accession_evidenceNDBHE600956
Public_nameCbr-lin-17
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lin-17
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
RNASeq_FPKMWBls:000000211.6728From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
15.8847From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
28.4618From_analysisRNASeq.briggsae.WBls:0000002.control_mean
57.8279From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
16.3121From_analysisRNASeq.briggsae.WBls:0000002.control_median
16.7395From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
25.5312From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000322.7558From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
24.4856From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
26.2154From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
25.3187From_analysisRNASeq.briggsae.WBls:0000003.control_mean
26.985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000461.2089From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
66.8977From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
72.5864From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
59.3233From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
66.0574From_analysisRNASeq.briggsae.WBls:0000004.control_mean
68.1394From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
69.0291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002715.4231From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.42266From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
35.1205From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
8.72603From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
18.0258From_analysisRNASeq.briggsae.WBls:0000027.control_median
18.3987From_analysisRNASeq.briggsae.WBls:0000027.control_mean
27.3256From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003527.0181From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.5859From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
17.1839From_analysisRNASeq.briggsae.WBls:0000038.control_median
18.3785From_analysisRNASeq.briggsae.WBls:0000038.control_mean
19.7819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
33.084From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.06211From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000414.5445From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
4.67538From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
5.02032From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.36525From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
5.75964From_analysisRNASeq.briggsae.WBls:0000041.control_mean
8.45345From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
5.77497From_analysisRNASeq.briggsae.WBls:0000041.control_median
6.18145From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.1847From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
7.86543From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000634.91279From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
5.10445From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
5.17246From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
5.47941From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
5.66832From_analysisRNASeq.briggsae.WBls:0000063.control_mean
7.67249From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
5.32593From_analysisRNASeq.briggsae.WBls:0000063.control_median
5.82294From_analysisRNASeq.briggsae.WBls:0000063.control_mean
6.59601From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010114.5859From_analysisRNASeq.briggsae.total_over_all_stages.control_median
21.9615From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
16.3121From_analysisRNASeq.briggsae.total_over_all_stages.control_median
24.344From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130474
00130475
Ortholog (26)
ParalogWBGene00026604Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027656Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027904Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040978Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in cell surface receptor signaling pathway. Predicted to be located in membrane. Is an ortholog of C. elegans lin-17. In C. elegans, lin-17 is involved in several processes, including axis specification; cell differentiation; and sex differentiation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04112a
CBG04112b
Corresponding_CDS_historyCBG04112:bp194
Corresponding_transcriptCBG04112a.1
CBG04112b.1
Other_sequence (22)
Experimental_infoExpr_patternExpr1067372
Microarray_resultsGPL8303_CB6_WBGene00026848_A
GPL8303_CB6_WBGene00026848_B
GPL8303_CB6_WBGene00026848_C
GPL8303_CB6_WBGene00026848_D
GPL8303_CB6_WBGene00026848_E
GPL14143_CBG04112_959-1018_0.904_13_C
GPL14143_CBG04112_1333-1392_0.936_3_A
GPL14143_CBG04112_1630-1689_0.955_1_B
MethodGene