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WormBase Tree Display for Gene: WBGene00026681

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Name Class

WBGene00026681SMapS_parentSequencecb25.fpc0071c2
IdentityVersion2
NameCGC_nameCbr-avr-14From_analysisInferred_from_orthology
Sequence_nameCBG03919
Molecular_nameCBG03919a
CBG03919a.1
CBP01074
CBG03919b
CBP47406
CBG03919a.2
CBG03919b.1
Other_nameCBG_03919Accession_evidenceNDBHE600906
Public_nameCbr-avr-14
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-avr-14
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classavr
RNASeq_FPKMWBls:00000022.78998From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.84188From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.19695From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.95899From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.31661From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2.72687From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.81593From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000031.43599From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
1.72993From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.02387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.41491From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
1.62492From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000045.77238From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
6.00113From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
6.22989From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
5.32757From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
6.22409From_analysisRNASeq.briggsae.WBls:0000004.control_mean
6.32202From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
7.46858From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.824954From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
15.4703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.08056From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
6.12527From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.63988From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.39375From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.1992From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000355.71942From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.63595From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.99435From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.36619From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.62984From_analysisRNASeq.briggsae.WBls:0000038.control_median
5.26534From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
5.56912From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.609552From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.859279From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.91599From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.9727From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.38119From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.08322From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.61385From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.8472From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.255From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.30347From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.371545From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.78881From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.02438From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.10367From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.40206From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
1.45582From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.03682From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.09903From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
1.10135From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001012.08056From_analysisRNASeq.briggsae.total_over_all_stages.control_median
4.43356From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.52249From_analysisRNASeq.briggsae.total_over_all_stages.control_median
4.32315From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130256
00130257
00130258
00130259
00130260
00130261
Ortholog (42)
Paralog (104)
Structured_descriptionAutomated_descriptionPredicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans avr-14. In C. elegans, avr-14 is involved in several processes, including locomotion involved in locomotory behavior; regulation of pharyngeal pumping; and response to xenobiotic stimulus.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG03919a
CBG03919b
Corresponding_CDS_historyCBG03919:bp194
CBG03919:bp256
Corresponding_transcriptCBG03919a.1
CBG03919a.2
CBG03919b.1
Other_sequence (57)
Experimental_infoExpr_patternExpr1056168
Microarray_resultsGPL8303_CB6_WBGene00026681_A
GPL8303_CB6_WBGene00026681_B
GPL8303_CB6_WBGene00026681_C
GPL8303_CB6_WBGene00026681_D
GPL8303_CB6_WBGene00026681_E
GPL14143_CBG03919_666-725_0.870_24_C
GPL14143_CBG03919_1398-1457_0.880_18_A
GPL14143_CBG03919_1526-1585_0.919_8_B
MethodGene