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WormBase Tree Display for Gene: WBGene00026512

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Name Class

WBGene00026512SMapS_parentSequencecb25.fpc0071d
IdentityVersion2
NameCGC_nameCbr-lin-53From_analysisInferred_from_orthology
Sequence_nameCBG03710
Molecular_nameCBG03710
CBG03710.1
CBP37586
Other_nameCBG_03710Accession_evidenceNDBHE600990
Public_nameCbr-lin-53
DB_infoDatabaseNDBlocus_tagCBG_03710
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lin-53
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
RNASeq_FPKMWBls:0000002113.658From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
137.997From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
140.337From_analysisRNASeq.briggsae.WBls:0000002.control_mean
169.356From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
152.029From_analysisRNASeq.briggsae.WBls:0000002.control_mean
153.676From_analysisRNASeq.briggsae.WBls:0000002.control_median
187.106From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003496.799From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
591.046From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
685.293From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
623.202From_analysisRNASeq.briggsae.WBls:0000003.control_mean
687.513From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:0000004363.91From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
372.766From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
381.621From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
339.611From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
377.475From_analysisRNASeq.briggsae.WBls:0000004.control_mean
383.321From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
418.913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:0000027117.254From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
27.8054From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
50.7531From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.19986From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
47.9655From_analysisRNASeq.briggsae.WBls:0000027.control_median
55.0962From_analysisRNASeq.briggsae.WBls:0000027.control_mean
68.1255From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003593.6881From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003831.0625From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
58.2665From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
60.2252From_analysisRNASeq.briggsae.WBls:0000038.control_median
62.1839From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
62.4589From_analysisRNASeq.briggsae.WBls:0000038.control_mean
98.3225From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:0000041218.585From_analysisRNASeq.briggsae.WBls:0000041.control_mean
253.167From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
259.477From_analysisRNASeq.briggsae.WBls:0000041.control_median
265.786From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
271.526From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
83.86From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
116.7From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
118.058From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
184.85From_analysisRNASeq.briggsae.WBls:0000041.control_mean
185.613From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:0000063101.594From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
111.281From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
113.876From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
115.061From_analysisRNASeq.briggsae.WBls:0000063.control_mean
151.064From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
97.4905From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
112.578From_analysisRNASeq.briggsae.WBls:0000063.control_median
118.798From_analysisRNASeq.briggsae.WBls:0000063.control_mean
137.481From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101113.876From_analysisRNASeq.briggsae.total_over_all_stages.control_median
168.092From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
127.77From_analysisRNASeq.briggsae.total_over_all_stages.control_median
192.934From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (36)
ParalogWBGene00026513Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00039268Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040122Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: WD domain, G-beta repeat; Histone-binding protein RBBP4, N-terminal; WD40-repeat-containing domain superfamily; G-protein beta WD-40 repeat; WD40/YVTN repeat-like-containing domain superfamily; WD40 repeat; and Histone-binding protein RBBP4 or subunit C of CAF1 complex. Is an ortholog of C. elegans lin-53. In C. elegans, lin-53 is involved in several processes, including cell fate specification; embryonic digestive tract morphogenesis; and nematode male tail tip morphogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG03710
Corresponding_CDS_historyCBG03710:bp194
CBG03710:bp207
Corresponding_transcriptCBG03710.1
Other_sequence (134)
Experimental_infoExpr_patternExpr1053107
Microarray_resultsGPL8303_CB6_WBGene00026512_A
GPL8303_CB6_WBGene00026512_B
GPL14143_CBG03710_633-692_0.910_9_C
GPL14143_CBG03710_677-736_0.915_7_B
GPL14143_CBG03710_880-939_0.871_56_A
Expression_clusterWBPaper00051425:CB_L1_vs_embryo_downregulated
WBPaper00051425:CB_L4_vs_embryo_downregulated
MethodGene