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WormBase Tree Display for Gene: WBGene00026371

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Name Class

WBGene00026371SMapS_parentSequencecb25.fpc0065a
IdentityVersion2
NameCGC_nameCbr-lin-49From_analysisInferred_from_orthology
Sequence_nameCBG03519
Molecular_nameCBG03519
CBG03519.1
CBP40234
Other_nameCBG_03519Accession_evidenceNDBHE600967
Public_nameCbr-lin-49
DB_infoDatabaseNDBlocus_tagCBG_03519
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lin-49
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
RNASeq_FPKMWBls:000000213.557From_analysisRNASeq.briggsae.WBls:0000002.control_mean
16.728From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
17.1348From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
6.8081From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
12.1005From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
13.1929From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.4143From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000332.1325From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
34.1067From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
36.0809From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
35.7653From_analysisRNASeq.briggsae.WBls:0000003.control_mean
39.0825From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000429.4607From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
29.8207From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
30.1808From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
29.9703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
30.6696From_analysisRNASeq.briggsae.WBls:0000004.control_mean
31.3738From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
32.3622From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002718.6048From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.30709From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
7.26547From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
9.39245From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.2497From_analysisRNASeq.briggsae.WBls:0000027.control_mean
12.0434From_analysisRNASeq.briggsae.WBls:0000027.control_median
16.8213From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003514.8688From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.0771From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
11.4537From_analysisRNASeq.briggsae.WBls:0000038.control_mean
11.9398From_analysisRNASeq.briggsae.WBls:0000038.control_median
13.8026From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
18.1475From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.78781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004114.3404From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
16.9235From_analysisRNASeq.briggsae.WBls:0000041.control_mean
17.4705From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
17.6941From_analysisRNASeq.briggsae.WBls:0000041.control_median
17.9177From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
17.9656From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
14.4417From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
14.5381From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
16.0043From_analysisRNASeq.briggsae.WBls:0000041.control_median
16.1123From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006310.2508From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
10.3108From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
13.6412From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
8.60995From_analysisRNASeq.briggsae.WBls:0000063.control_mean
8.84693From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
10.2808From_analysisRNASeq.briggsae.WBls:0000063.control_median
12.38From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
9.23829From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010114.8688From_analysisRNASeq.briggsae.total_over_all_stages.control_median
15.3766From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
15.7984From_analysisRNASeq.briggsae.total_over_all_stages.control_median
17.0788From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (29)
ParalogWBGene00028061Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029087Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035839Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Enhancer of polycomb-like; Zinc finger, RING/FYVE/PHD-type; PHD-finger; PHD-zinc-finger like domain; Bromodomain-like superfamily; Zinc finger, PHD-type; Zinc finger, FYVE/PHD-type; Bromodomain; and Enhancer of polycomb-like, N-terminal. Is an ortholog of C. elegans lin-49. In C. elegans, lin-49 is involved in cell fate specification; maintenance of left/right asymmetry; and positive regulation of gene expression.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG03519
Corresponding_CDS_historyCBG03519:bp194
CBG03519:bp255
Corresponding_transcriptCBG03519.1
Other_sequence (41)
Experimental_infoExpr_patternExpr1056570
Microarray_resultsGPL14143_CBG03519_2942-3001_0.851_44_B
GPL14143_CBG03519_3058-3117_0.947_2_C
GPL14143_CBG03519_3062-3121_0.960_1_A
MethodGene