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WormBase Tree Display for Gene: WBGene00025999

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Name Class

WBGene00025999SMapS_parentSequencecb25.fpc0058
IdentityVersion2
NameCGC_nameCbr-crn-5From_analysisInferred_from_orthology
Sequence_nameCBG03059
Molecular_nameCBG03059
CBG03059.1
CBP14653
Other_nameCBG_03059Accession_evidenceNDBHE601438
Public_nameCbr-crn-5
DB_infoDatabaseNDBlocus_tagCBG_03059
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-crn-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcrn
RNASeq_FPKMWBls:000000243.0109From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
46.7305From_analysisRNASeq.briggsae.WBls:0000002.control_mean
48.3602From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
48.8203From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
48.5902From_analysisRNASeq.briggsae.WBls:0000002.control_median
50.9277From_analysisRNASeq.briggsae.WBls:0000002.control_mean
63.5192From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000362.3767From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
65.0963From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
67.8159From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
51.7073From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
60.6333From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000453.9003From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
57.3209From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
60.7415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
42.5078From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
56.4049From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
59.7078From_analysisRNASeq.briggsae.WBls:0000004.control_mean
84.9844From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.7204From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
16.3198From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.80511From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
34.4339From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
21.3546From_analysisRNASeq.briggsae.WBls:0000027.control_mean
23.0772From_analysisRNASeq.briggsae.WBls:0000027.control_median
36.4591From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003527.8979From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.158From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
30.9142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
33.1025From_analysisRNASeq.briggsae.WBls:0000038.control_median
35.2908From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
38.1828From_analysisRNASeq.briggsae.WBls:0000038.control_mean
72.3684From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004139.6989From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
67.1037From_analysisRNASeq.briggsae.WBls:0000041.control_mean
70.4507From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
73.9718From_analysisRNASeq.briggsae.WBls:0000041.control_median
77.493From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
80.7721From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
45.1846From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
65.6773From_analysisRNASeq.briggsae.WBls:0000041.control_mean
80.4643From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006330.2929From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
36.291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
37.8928From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
42.3164From_analysisRNASeq.briggsae.WBls:0000063.control_mean
53.2887From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
53.8168From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
39.9527From_analysisRNASeq.briggsae.WBls:0000063.control_median
42.0126From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
42.2658From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010142.7249From_analysisRNASeq.briggsae.total_over_all_stages.control_median
43.0841From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
43.1592From_analysisRNASeq.briggsae.total_over_all_stages.control_median
46.1232From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (28)
ParalogWBGene00025010Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00270326Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Exoribonuclease, PH domain 2 superfamily; 3' exoribonuclease family, domain 2; Exoribonuclease, phosphorolytic domain 2; PNPase/RNase PH domain superfamily; 3' exoribonuclease family, domain 1; Exoribonuclease, phosphorolytic domain 1; and Ribosomal protein S5 domain 2-type fold. Is an ortholog of C. elegans crn-5. In C. elegans, crn-5 is involved in RNA processing and apoptotic DNA fragmentation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG03059
Corresponding_CDS_historyCBG03059:bp194
Corresponding_transcriptCBG03059.1
Other_sequenceCJC05327_1
CGC00890_1
CBC01241_1
Experimental_infoExpr_patternExpr1059092
Microarray_resultsGPL8303_CB6_WBGene00025999_A
GPL8303_CB6_WBGene00025999_B
GPL14143_CBG03059_280-339_0.886_2_A
GPL14143_CBG03059_401-460_0.881_3_B
GPL14143_CBG03059_592-651_0.818_30_C
MethodGene