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WormBase Tree Display for Gene: WBGene00025242

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Name Class

WBGene00025242SMapS_parentSequencecb25.fpc0045
IdentityVersion2
NameCGC_nameCbr-lgc-40From_analysisInferred_from_orthology
Sequence_nameCBG02128
Molecular_name (15)
Other_nameCBG_02128Accession_evidenceNDBHE601451
Public_nameCbr-lgc-40
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:54WBPerson1971EventImportedInitial conversion from brigace
221 Apr 2008 17:10:50WBPerson2970Name_changeCGC_nameCbr-lgc-40
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlgc
RNASeq_FPKMWBls:00000023.20536From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
4.01385From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
4.01869From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.83686From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.88068From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
3.48419From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.60961From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.353188From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
0.380408From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.407629From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.253606From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.490253From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.628394From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.766535From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.945203From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.949089From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1.16311From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
1.35703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.787877From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.00736From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.65639From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.17393From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.59065From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.35601From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.45489From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000356.87314From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.81615From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.36503From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3.02889From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.69275From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
4.31375From_analysisRNASeq.briggsae.WBls:0000038.control_mean
9.38105From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.450971From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.470023From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.571418From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.672812From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.06072From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.64909From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.52971From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.55783From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.44284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
2.49251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.180253From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.288823From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.391649From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.716708From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.772463From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.502765From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.576171From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.49878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001011.81615From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.96274From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.65746From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.58312From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00128645
00128646
00128647
00128648
00128649
00128650
Ortholog (29)
Paralog (104)
Structured_descriptionAutomated_descriptionPredicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-40.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG02128a
CBG02128b
CBG02128c
CBG02128d
CBG02128e
Corresponding_CDS_historyCBG02128:bp194
CBG02128:bp255
Corresponding_transcriptCBG02128a.1
CBG02128b.1
CBG02128c.1
CBG02128d.1
CBG02128e.1
Other_sequenceFD515428.1
Dviv_isotig26821
ACC14093_1
Name_isotig00541
Dviv_isotig34123
CSC01011_1
EX563146.1
Experimental_infoExpr_patternExpr1054451
Microarray_resultsGPL8303_CB6_WBGene00025242_A
GPL8303_CB6_WBGene00025242_B
GPL14143_CBG02128_690-749_0.723_36_C
GPL14143_CBG02128_808-867_0.762_20_B
GPL14143_CBG02128_975-1034_0.792_2_A
MethodGene