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WormBase Tree Display for Gene: WBGene00025072

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Name Class

WBGene00025072SMapS_parentSequencecb25.fpc0045
IdentityVersion2
NameCGC_nameCbr-vab-15From_analysisInferred_from_orthology
Sequence_nameCBG01903
Molecular_nameCBG01903
CBG01903.1
CBP06206
Other_nameCBG_01903Accession_evidenceNDBHE601451
Public_nameCbr-vab-15
DB_infoDatabaseNDBlocus_tagCBG_01903
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:54WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-vab-15
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvab
Allele (22)
RNASeq_FPKMWBls:00000021.74619From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.92643From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
3.55739From_analysisRNASeq.briggsae.WBls:0000002.control_mean
6.99955From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.76186From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.84415From_analysisRNASeq.briggsae.WBls:0000002.control_median
3.10851From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000315.1792From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
21.7763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
8.58218From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
15.5055From_analysisRNASeq.briggsae.WBls:0000003.control_mean
16.1579From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000431.6139From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
32.3952From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
33.1766From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
30.0362From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
33.7604From_analysisRNASeq.briggsae.WBls:0000004.control_mean
35.2179From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
38.7573From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.343134From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.542562From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.08135From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.35834From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.26717From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.99177From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
2.05895From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000351.74775From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.612611From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.673035From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0.903243From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.13345From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.19125From_analysisRNASeq.briggsae.WBls:0000038.control_mean
2.34589From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.349579From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.399151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.435994From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.472837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.655874From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.40193From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.632522From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.756277From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.792206From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
1.12196From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.138946From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.403781From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.457292From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.680209From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.74246From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.436032From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.52729From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.597287From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001011.40193From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.76364From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.74697From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.72579From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00128475
Ortholog (31)
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Is an ortholog of C. elegans vab-15. In C. elegans, vab-15 is involved in embryonic morphogenesis; locomotory behavior; and parturition.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG01903
Corresponding_CDS_historyCBG01903:bp194
Corresponding_transcriptCBG01903.1
Other_sequenceJI180574.1
TSC11261_1
EX501502.1
Oden_isotig20474
JI179004.1
JI180736.1
Experimental_infoExpr_patternExpr1057897
Microarray_resultsGPL8303_CB6_WBGene00025072_A
GPL8303_CB6_WBGene00025072_B
GPL14143_CBG01903_117-176_0.875_5_A
GPL14143_CBG01903_278-337_0.538_99_B
GPL14143_CBG01903_398-457_0.887_1_C
MethodGene