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WormBase Tree Display for Gene: WBGene00025013

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Name Class

WBGene00025013SMapS_parentSequencecb25.fpc0039
IdentityVersion1
NameSequence_nameCBG01828
Molecular_nameCBG01828
CBG01828.1
CBP36763
Other_nameCBG_01828Accession_evidenceNDBHE601298
Public_nameCBG01828
DB_infoDatabaseNDBlocus_tagCBG_01828
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:54WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00015169
RNASeq_FPKMWBls:000000233.6964From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
35.6084From_analysisRNASeq.briggsae.WBls:0000002.control_mean
36.2686From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
36.8603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
36.5644From_analysisRNASeq.briggsae.WBls:0000002.control_median
40.0966From_analysisRNASeq.briggsae.WBls:0000002.control_mean
53.5612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003150.01From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
164.748From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
179.486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
148.679From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
159.392From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004100.554From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
104.466From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
108.378From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
112.147From_analysisRNASeq.briggsae.WBls:0000004.control_mean
112.748From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
116.817From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
122.238From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.12442From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
24.2534From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.69723From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
9.69168From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.5201From_analysisRNASeq.briggsae.WBls:0000027.control_median
11.6045From_analysisRNASeq.briggsae.WBls:0000027.control_mean
17.3429From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003514.2557From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003815.2594From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
15.3551From_analysisRNASeq.briggsae.WBls:0000038.control_mean
16.9865From_analysisRNASeq.briggsae.WBls:0000038.control_median
18.7137From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
19.8273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
7.61989From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004126.5167From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
65.5321From_analysisRNASeq.briggsae.WBls:0000041.control_mean
77.3345From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
77.7278From_analysisRNASeq.briggsae.WBls:0000041.control_median
78.1211From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
80.1561From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
38.6314From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
42.3374From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
57.1829From_analysisRNASeq.briggsae.WBls:0000041.control_mean
59.8359From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006330.3165From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
34.0828From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
34.8536From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
35.1506From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
37.619From_analysisRNASeq.briggsae.WBls:0000063.control_mean
53.6913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
35.0021From_analysisRNASeq.briggsae.WBls:0000063.control_median
37.6392From_analysisRNASeq.briggsae.WBls:0000063.control_mean
37.7404From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010133.6964From_analysisRNASeq.briggsae.total_over_all_stages.control_median
44.9302From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
35.7096From_analysisRNASeq.briggsae.total_over_all_stages.control_median
52.4492From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (22)
ParalogWBGene00041997Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: SAP domain and SAP domain superfamily. Is an ortholog of C. elegans C39E9.12.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG01828
Corresponding_CDS_historyCBG01828:bp194
Corresponding_transcriptCBG01828.1
Other_sequenceCJC18214_1
CR09383
CGC00130_1
CRC07866_1
CJC00842_1
CR09384
CGC00913_1
Experimental_infoExpr_patternExpr1059455
Microarray_resultsGPL8303_CB6_WBGene00025013_A
GPL8303_CB6_WBGene00025013_B
GPL14143_CBG01828_793-852_0.849_68_C
GPL14143_CBG01828_1039-1098_0.943_3_B
GPL14143_CBG01828_1231-1290_0.860_56_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene