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WormBase Tree Display for Gene: WBGene00024820

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Name Class

WBGene00024820SMapS_parentSequencecb25.fpc0039
IdentityVersion2
NameCGC_nameCbr-asm-3From_analysisInferred_from_orthology
Sequence_nameCBG01606
Molecular_nameCBG01606
CBG01606.1
CBP40870
Other_nameCBG_01606Accession_evidenceNDBHE601298
Public_nameCbr-asm-3
DB_infoDatabaseNDBlocus_tagCBG_01606
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:54WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-asm-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classasm
RNASeq_FPKMWBls:000000218.7576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
26.4066From_analysisRNASeq.briggsae.WBls:0000002.control_mean
27.1711From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
33.2911From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
15.4761From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
22.9643From_analysisRNASeq.briggsae.WBls:0000002.control_median
23.674From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.064613From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.129226From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.152039From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.326892From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.051571From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.103142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
0.042312From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.052424From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
0.055996From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.140946From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.837385From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.42649From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.30113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.351323From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
0.594354From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.1577From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000351.52039From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.120645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.02646From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.26345From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.50043From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
15.6614From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.57723From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:000004110.3224From_analysisRNASeq.briggsae.WBls:0000041.control_mean
16.2547From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
8.09363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
8.41292From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
8.47075From_analysisRNASeq.briggsae.WBls:0000041.control_median
8.52857From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
12.3916From_analysisRNASeq.briggsae.WBls:0000041.control_median
16.3116From_analysisRNASeq.briggsae.WBls:0000041.control_mean
23.5113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
33.0685From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006319.3032From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
20.275From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
20.5396From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
23.694From_analysisRNASeq.briggsae.WBls:0000063.control_mean
27.9022From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
30.4501From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
22.6534From_analysisRNASeq.briggsae.WBls:0000063.control_median
23.8729From_analysisRNASeq.briggsae.WBls:0000063.control_mean
24.7671From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010111.3616From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
8.41292From_analysisRNASeq.briggsae.total_over_all_stages.control_median
11.2394From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
8.25327From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00128209
00128210
00128211
Ortholog (34)
ParalogWBGene00031105Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032346Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037012Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable sphingomyelin phosphodiesterase activity. Predicted to be involved in sphingomyelin catabolic process. Is an ortholog of C. elegans asm-3. In C. elegans, asm-3 is involved in lipid droplet disassembly.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG01606
Corresponding_CDS_historyCBG01606:bp194
CBG01606:bp255
Corresponding_transcriptCBG01606.1
Other_sequence (24)
Experimental_infoExpr_patternExpr1067750
Microarray_resultsGPL8303_CB6_WBGene00024820_A
GPL8303_CB6_WBGene00024820_B
GPL14143_CBG01606_1090-1149_0.890_15_B
GPL14143_CBG01606_1191-1250_0.877_25_C
GPL14143_CBG01606_1306-1365_0.872_26_A
MethodGene