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WormBase Tree Display for Gene: WBGene00024260

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Name Class

WBGene00024260SMapS_parentSequencecb25.fpc0022b
IdentityVersion2
NameCGC_nameCbr-mrpl-53From_analysisInferred_from_orthology
Sequence_nameCBG00956
Molecular_nameCBG00956
CBG00956.1
CBP13967
Other_nameCBG_00956Accession_evidenceNDBHE600951
Public_nameCbr-mrpl-53
DB_infoDatabaseNDBlocus_tagCBG_00956
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:53WBPerson1971EventImportedInitial conversion from brigace
210 Jun 2011 16:53:57WBPerson2970Name_changeCGC_nameCbr-mrpl-53
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmrpl
RNASeq_FPKMWBls:000000228.7676From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
39.4397From_analysisRNASeq.briggsae.WBls:0000002.control_mean
40.1518From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
49.3996From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
43.0346From_analysisRNASeq.briggsae.WBls:0000002.control_mean
44.7757From_analysisRNASeq.briggsae.WBls:0000002.control_median
53.8195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000317.7133From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
22.7216From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
27.73From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
21.385From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
22.2761From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000432.6914From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
34.4141From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
36.1367From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
32.5547From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
37.2488From_analysisRNASeq.briggsae.WBls:0000004.control_mean
40.0809From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
44.7801From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002715.1599From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
22.2993From_analysisRNASeq.briggsae.WBls:0000027.control_mean
43.9803From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
7.75775From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
27.06From_analysisRNASeq.briggsae.WBls:0000027.control_mean
28.2509From_analysisRNASeq.briggsae.WBls:0000027.control_median
41.342From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003531.5838From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003823.7606From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
27.679From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
33.8088From_analysisRNASeq.briggsae.WBls:0000038.control_median
35.7721From_analysisRNASeq.briggsae.WBls:0000038.control_mean
39.9385From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
51.7102From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004142.424From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
44.383From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
46.2055From_analysisRNASeq.briggsae.WBls:0000041.control_median
47.2406From_analysisRNASeq.briggsae.WBls:0000041.control_mean
48.028From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
54.1273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
43.569From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
45.9819From_analysisRNASeq.briggsae.WBls:0000041.control_median
46.6854From_analysisRNASeq.briggsae.WBls:0000041.control_mean
47.5809From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006330.273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
30.6331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
41.9748From_analysisRNASeq.briggsae.WBls:0000063.control_mean
44.1025From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
46.7894From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
58.0758From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
35.541From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
39.8218From_analysisRNASeq.briggsae.WBls:0000063.control_median
40.9025From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010136.3375From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
39.9385From_analysisRNASeq.briggsae.total_over_all_stages.control_median
37.2221From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
40.1163From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (27)
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domain: Thioredoxin-like superfamily. Is an ortholog of C. elegans mrpl-53.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG00956
Corresponding_CDS_historyCBG00956:bp194
Corresponding_transcriptCBG00956.1
Other_sequence (27)
Experimental_infoExpr_patternExpr1053309
Microarray_resultsGPL8303_CB6_WBGene00024260_A
GPL8303_CB6_WBGene00024260_B
GPL14143_CBG00956_128-187_0.828_14_C
GPL14143_CBG00956_166-225_0.890_3_B
GPL14143_CBG00956_275-334_0.918_1_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene