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WormBase Tree Display for Gene: WBGene00023898

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Name Class

WBGene00023898SMapS_parentSequencecb25.fpc0011a
IdentityVersion2
NameCGC_nameCbr-vab-9From_analysisInferred_from_orthology
Sequence_nameCBG00522
Molecular_nameCBG00522
CBG00522.1
CBP05791
Other_nameCBG_00522Accession_evidenceNDBHE600970
Public_nameCbr-vab-9
DB_infoDatabaseNDBlocus_tagCBG_00522
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:53WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-vab-9
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvab
AlleleWBVar00135584
RNASeq_FPKMWBls:000000214.113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
19.5575From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
23.3632From_analysisRNASeq.briggsae.WBls:0000002.control_mean
36.4191From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
12.658From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
16.8353From_analysisRNASeq.briggsae.WBls:0000002.control_median
20.6869From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000033.04386From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
5.23726From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
7.43065From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
11.0188From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
7.16444From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000445.4336From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
49.6473From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
53.8609From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
54.1802From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
58.5183From_analysisRNASeq.briggsae.WBls:0000004.control_mean
60.7835From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
78.3334From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002722.3513From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.30267From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
56.7404From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
8.01091From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
25.369From_analysisRNASeq.briggsae.WBls:0000027.control_median
27.4453From_analysisRNASeq.briggsae.WBls:0000027.control_mean
42.7271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003535.2391From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003820.5293From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
29.6181From_analysisRNASeq.briggsae.WBls:0000038.control_mean
32.465From_analysisRNASeq.briggsae.WBls:0000038.control_median
44.4008From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
46.7237From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.8186From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004110.4673From_analysisRNASeq.briggsae.WBls:0000041.control_mean
19.9351From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
6.28535From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
7.21596From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
7.82431From_analysisRNASeq.briggsae.WBls:0000041.control_median
8.43266From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
13.3808From_analysisRNASeq.briggsae.WBls:0000041.control_mean
13.3836From_analysisRNASeq.briggsae.WBls:0000041.control_median
18.3346From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
20.0809From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006310.2719From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
12.1455From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
12.5455From_analysisRNASeq.briggsae.WBls:0000063.control_mean
25.7525From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
6.57942From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
7.97803From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
11.2087From_analysisRNASeq.briggsae.WBls:0000063.control_median
12.719From_analysisRNASeq.briggsae.WBls:0000063.control_mean
13.5867From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010119.5575From_analysisRNASeq.briggsae.total_over_all_stages.control_median
23.3246From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
19.7463From_analysisRNASeq.briggsae.total_over_all_stages.control_median
26.0031From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (29)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domain: P53-induced protein. Is an ortholog of C. elegans vab-9. In C. elegans, vab-9 is involved in cell-cell adhesion; defense response to Gram-negative bacterium; and innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG00522
Corresponding_CDS_historyCBG00522:bp194
CBG00522:bp255
Corresponding_transcriptCBG00522.1
Other_sequenceACC01046_1
AE04818
Dviv_isotig15747
Oden_isotig14674
Dviv_isotig15748
EX548142.1
EY463668.1
Acan_isotig09543
Oden_isotig14673
AYC03823_1
Experimental_infoExpr_patternExpr1061038
Microarray_resultsGPL8303_CB6_WBGene00023898_A
GPL8303_CB6_WBGene00023898_B
GPL14143_CBG00522_333-392_0.914_1_A
GPL14143_CBG00522_420-479_0.874_9_B
GPL14143_CBG00522_424-483_0.864_12_C
MethodGene