WormBase Tree Display for Gene: WBGene00022296
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| WBGene00022296 | SMap | S_parent | Sequence | Y76B12C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | xpc-1 | Person_evidence | WBPerson2696 | |||||
| Sequence_name | Y76B12C.2 | ||||||||
| Molecular_name | Y76B12C.2 | ||||||||
| Y76B12C.2.1 | |||||||||
| CE31668 | |||||||||
| Other_name | CELE_Y76B12C.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | xpc-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 19 May 2006 11:04:51 | WBPerson2970 | Name_change | CGC_name | xpc-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | xpc | ||||||||
| Allele (424) | |||||||||
| Strain | WBStrain00001746 | ||||||||
| WBStrain00001752 | |||||||||
| WBStrain00031598 | |||||||||
| WBStrain00007586 | |||||||||
| WBStrain00007587 | |||||||||
| WBStrain00007589 | |||||||||
| WBStrain00051050 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Contained_in_operon | CEOP4056 | ||||||||
| Ortholog (37) | |||||||||
| Structured_description | Automated_description | Predicted to enable damaged DNA binding activity and single-stranded DNA binding activity. Involved in response to UV. Predicted to be located in cytoplasm. Predicted to be part of XPC complex and nucleotide-excision repair factor 2 complex. Used to study xeroderma pigmentosum. Human ortholog(s) of this gene implicated in pancreatic cancer; serous cystadenocarcinoma; and xeroderma pigmentosum group C. Is an ortholog of human XPC (XPC complex subunit, DNA damage recognition and repair factor). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:0050427 | Homo sapiens | Paper_evidence | WBPaper00036260 | ||||
| Accession_evidence | OMIM | 278720 | |||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 12 Dec 2013 00:00:00 | ||||||||
| Potential_model | DOID:0110844 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12816) | |||||
| DOID:1793 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12816) | ||||||
| DOID:3114 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12816) | ||||||
| DOID:0050427 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12816) | ||||||
| Models_disease_asserted | WBDOannot00000255 | ||||||||
| Molecular_info | Corresponding_CDS | Y76B12C.2 | |||||||
| Corresponding_CDS_history | Y76B12C.2:wp82 | ||||||||
| Corresponding_transcript | Y76B12C.2.1 | ||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf034296 | ||||||||
| WBsf659960 | |||||||||
| WBsf995608 | |||||||||
| WBsf995609 | |||||||||
| WBsf227994 | |||||||||
| WBsf227995 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00103083 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00103084 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021476 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103082 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058496 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram266 | ||||||||
| Expr7130 | |||||||||
| Expr14697 | |||||||||
| Expr1023363 | |||||||||
| Expr1039840 | |||||||||
| Expr1161905 | |||||||||
| Expr2018102 | |||||||||
| Expr2036240 | |||||||||
| Drives_construct | WBCnstr00002561 | ||||||||
| WBCnstr00002567 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (128) | |||||||||
| Interaction | WBInteraction000037916 | ||||||||
| WBInteraction000040723 | |||||||||
| WBInteraction000043436 | |||||||||
| WBInteraction000043512 | |||||||||
| WBInteraction000520209 | |||||||||
| WBInteraction000539768 | |||||||||
| WBInteraction000549470 | |||||||||
| WBInteraction000551021 | |||||||||
| WBInteraction000575496 | |||||||||
| WBInteraction000582515 | |||||||||
| Map_info | Map | IV | Position | -12.3288 | Error | 0.148893 | |||
| Positive | Positive_clone | Y76B12C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
