WormBase Tree Display for Gene: WBGene00022141
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| WBGene00022141 | SMap | S_parent | Sequence | Y71G12B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | chaf-2 | Paper_evidence | WBPaper00040574 | |||||
| Person_evidence | WBPerson3509 | ||||||||
| WBPerson268 | |||||||||
| Sequence_name | Y71G12B.1 | ||||||||
| Molecular_name | Y71G12B.1a | ||||||||
| Y71G12B.1a.1 | |||||||||
| CE29916 | |||||||||
| Y71G12B.1b | |||||||||
| CE29917 | |||||||||
| Y71G12B.1b.1 | |||||||||
| Other_name | CELE_Y71G12B.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | chaf-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Jan 2012 14:49:50 | WBPerson2970 | Name_change | CGC_name | chaf-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | chaf | ||||||||
| Allele (55) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089070 | ||||||||
| 00089071 | |||||||||
| 00089072 | |||||||||
| 00089073 | |||||||||
| 00126318 | |||||||||
| Ortholog (39) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in nucleosome assembly. Predicted to be located in nucleus. Predicted to be part of CAF-1 complex. Human ortholog(s) of this gene implicated in several diseases, including glioblastoma; oral squamous cell carcinoma; and skin melanoma. Is an ortholog of human CHAF1B (chromatin assembly factor 1 subunit B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050866 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1911) | ||||
| DOID:3068 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1911) | ||||||
| DOID:10283 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1911) | ||||||
| DOID:3070 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1911) | ||||||
| DOID:8923 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1911) | ||||||
| Molecular_info | Corresponding_CDS | Y71G12B.1a | |||||||
| Y71G12B.1b | |||||||||
| Corresponding_transcript | Y71G12B.1a.1 | ||||||||
| Y71G12B.1b.1 | |||||||||
| Other_sequence (20) | |||||||||
| Associated_feature | WBsf643065 | ||||||||
| WBsf655980 | |||||||||
| WBsf982761 | |||||||||
| WBsf982762 | |||||||||
| WBsf1009255 | |||||||||
| WBsf217251 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00066676 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00117752 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116705 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091557 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117751 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058205 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004826 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066591 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016756 | ||||||||
| Expr1039749 | |||||||||
| Expr1161612 | |||||||||
| Expr2009951 | |||||||||
| Expr2028191 | |||||||||
| Drives_construct | WBCnstr00024342 | ||||||||
| Construct_product | WBCnstr00024342 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (118) | |||||||||
| Interaction (68) | |||||||||
| Map_info | Map | I | Position | -12.7253 | |||||
| Positive | Positive_clone | Y71G12B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00039485 | |||||||||
| WBPaper00040574 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
