WormBase Tree Display for Gene: WBGene00021935
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| WBGene00021935 | SMap | S_parent | Sequence | Y55F3BL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | mrpl-46 | Person_evidence | WBPerson261 | |||||
| Sequence_name | Y55F3BL.1 | ||||||||
| Molecular_name | Y55F3BL.1 | ||||||||
| Y55F3BL.1.1 | |||||||||
| CE46313 | |||||||||
| Other_name | CELE_Y55F3BL.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | mrpl-46 | ||||||||
| DB_info | Database | AceView | gene | 4B557 | |||||
| WormQTL | gene | WBGene00021935 | |||||||
| WormFlux | gene | WBGene00021935 | |||||||
| NDB | locus_tag | CELE_Y55F3BL.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021935|UniProtKB=C0VXV6 | |||||||
| family | PTHR13124 | ||||||||
| NCBI | gene | 190311 | |||||||
| RefSeq | protein | NM_067593.6 | |||||||
| TREEFAM | TREEFAM_ID | TF324756 | |||||||
| TrEMBL | UniProtAcc | C0VXV6 | |||||||
| UniProt_GCRP | UniProtAcc | C0VXV6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 10 Jun 2011 16:47:12 | WBPerson2970 | Name_change | CGC_name | mrpl-46 | ||||
| 3 | 10 Jun 2011 16:50:10 | WBPerson2970 | Name_change | CGC_name | mrpl-46 | ||||
| Split_into | WBGene00185088 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mrpl | ||||||||
| Allele (78) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00006686 | ||||||||
| 00006687 | |||||||||
| 00006688 | |||||||||
| 00006689 | |||||||||
| 00006690 | |||||||||
| 00006691 | |||||||||
| 00126129 | |||||||||
| Contained_in_operon | CEOP4040 | ||||||||
| Ortholog (33) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of ribosome. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is an ortholog of human MRPL46 (mitochondrial ribosomal protein L46). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y55F3BL.1 | |||||||
| Corresponding_CDS_history | Y55F3BL.1:wp124 | ||||||||
| Y55F3BL.1:wp181 | |||||||||
| Y55F3BL.1:wp201 | |||||||||
| Y55F3BL.1:wp227 | |||||||||
| Corresponding_transcript | Y55F3BL.1.1 | ||||||||
| Other_sequence | Tcol_isotig02911 | ||||||||
| Dviv_isotig17875 | |||||||||
| Tcir_isotig23300 | |||||||||
| Tcol_isotig02910 | |||||||||
| Tcol_isotig15169 | |||||||||
| HCC04975_1 | |||||||||
| MHC12719_1 | |||||||||
| CBC17397_1 | |||||||||
| Dviv_isotig17876 | |||||||||
| HC07115 | |||||||||
| Associated_feature | WBsf227884 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00026865 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00009392 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078621 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078597 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019919 | ||||||||
| Expr1039647 | |||||||||
| Expr1160973 | |||||||||
| Expr2013723 | |||||||||
| Expr2031958 | |||||||||
| Drives_construct | WBCnstr00024398 | ||||||||
| Construct_product | WBCnstr00024398 | ||||||||
| Microarray_results | SMD_Y55F3B_743.B | ||||||||
| Aff_Y55F3B_743.B | |||||||||
| GPL14144_Y55F3BL.1_783-842_0.962_1_A | |||||||||
| GPL19516_CGZ0049376 | |||||||||
| GPL21109_Y55F3BL.1 | |||||||||
| GPL8673_Y55F3BL_1P00213 | |||||||||
| Expression_cluster (64) | |||||||||
| Interaction | WBInteraction000552739 | ||||||||
| WBInteraction000567725 | |||||||||
| WBInteraction000568247 | |||||||||
| WBInteraction000575425 | |||||||||
| WBInteraction000579753 | |||||||||
| WBInteraction000586428 | |||||||||
| Map_info | Map | IV | Position | -23.3685 | Error | 0.02212 | |||
| Positive | Positive_clone | Y55F3BL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
