WormBase Tree Display for Gene: WBGene00021864
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| WBGene00021864 | SMap | S_parent | Sequence | Y54F10BM | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxa-1 | |||||||
| Sequence_name | Y54F10BM.10 | ||||||||
| Molecular_name | Y54F10BM.10 | ||||||||
| Y54F10BM.10.1 | |||||||||
| CE27007 | |||||||||
| Other_name | CELE_Y54F10BM.10 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | fbxa-1 | ||||||||
| DB_info | Database | AceView | gene | 3D396 | |||||
| WormQTL | gene | WBGene00021864 | |||||||
| WormFlux | gene | WBGene00021864 | |||||||
| NDB | locus_tag | CELE_Y54F10BM.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021864|UniProtKB=Q95XK9 | |||||||
| family | PTHR23015 | ||||||||
| NCBI | gene | 190274 | |||||||
| RefSeq | protein | NM_065133.3 | |||||||
| TREEFAM | TREEFAM_ID | TF322006 | |||||||
| TrEMBL | UniProtAcc | Q95XK9 | |||||||
| UniProt_GCRP | UniProtAcc | Q95XK9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 10 Nov 2009 13:36:02 | WBPerson1983 | Name_change | CGC_name | fbxa-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxa | ||||||||
| Allele (90) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (52) | |||||||||
| Paralog (225) | |||||||||
| Structured_description | Automated_description | Enriched in body wall muscle cell based on tiling array studies. Is affected by several genes including age-1; eat-2; and smg-1 based on microarray and RNA-seq studies. Is affected by antimycin based on RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54F10BM.10 | |||||||
| Corresponding_transcript | Y54F10BM.10.1 | ||||||||
| Associated_feature | WBsf991493 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00057411 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1026825 | ||||||||
| Expr1160841 | |||||||||
| Expr2011514 | |||||||||
| Expr2029751 | |||||||||
| Microarray_results (11) | |||||||||
| Expression_cluster (38) | |||||||||
| Interaction | WBInteraction000520450 | ||||||||
| Map_info | Map | III | Position | -14.7943 | Error | 0.004567 | |||
| Positive | Positive_clone | Y54F10BM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | [091110 pad] fbxa-1 was incorrectly attached to this gene because of a typo in sequence naming. This assignment should have been to Y54F10BM.10. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
