WormBase Tree Display for Gene: WBGene00021848
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| WBGene00021848 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-239 | Person_evidence | WBPerson600 | |||||
| Sequence_name | Y54F10AM.1 | ||||||||
| Molecular_name | Y54F10AM.1 | ||||||||
| Y54F10AM.1.1 | |||||||||
| CE43713 | |||||||||
| Other_name | CELE_Y54F10AM.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | nhr-239 | ||||||||
| DB_info | Database | AceView | gene | 3D653 | |||||
| WormQTL | gene | WBGene00021848 | |||||||
| WormFlux | gene | WBGene00021848 | |||||||
| NDB | locus_tag | CELE_Y54F10AM.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021848|UniProtKB=Q9BKZ8 | |||||||
| family | PTHR24083 | ||||||||
| NCBI | gene | 190264 | |||||||
| RefSeq | protein | NM_065178.5 | |||||||
| TREEFAM | TREEFAM_ID | TF315716 | |||||||
| TrEMBL | UniProtAcc | Q9BKZ8 | |||||||
| UniProt_GCRP | UniProtAcc | Q9BKZ8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-239 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (97) | |||||||||
| Strain | WBStrain00032616 | ||||||||
| WBStrain00047550 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (28) | |||||||||
| Paralog (43) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in head neurons and pharyngeal neurons. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54F10AM.1 | |||||||
| Corresponding_CDS_history | Y54F10AM.1:wp154 | ||||||||
| Y54F10AM.1:wp202 | |||||||||
| Corresponding_transcript | Y54F10AM.1.1 | ||||||||
| Other_sequence | MHC03095_1 | ||||||||
| MH01447 | |||||||||
| Associated_feature | WBsf644986 | ||||||||
| WBsf658698 | |||||||||
| WBsf978456 | |||||||||
| WBsf224530 | |||||||||
| Transcription_factor | WBTranscriptionFactor000682 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00057395 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr10053 | ||||||||
| Expr1028760 | |||||||||
| Expr1160828 | |||||||||
| Expr2014138 | |||||||||
| Expr2032378 | |||||||||
| Drives_construct | WBCnstr00015025 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (51) | |||||||||
| Interaction (30) | |||||||||
| Map_info | Map | III | Position | -12.1625 | Error | 0.095292 | |||
| Positive | Positive_clone | Y54F10AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00034447 | |||||||||
| WBPaper00039323 | |||||||||
| WBPaper00041200 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
