WormBase Tree Display for Gene: WBGene00021807
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| WBGene00021807 | SMap | S_parent | Sequence | Y53G8AM | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y53G8AM.7 | |||||||
| Molecular_name | Y53G8AM.7 | ||||||||
| Y53G8AM.7.1 | |||||||||
| CE54248 | |||||||||
| Other_name | Y53G8AM.d | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y53G8AM.7 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | Y53G8AM.7 | ||||||||
| DB_info | Database | AceView | gene | 3E350 | |||||
| WormQTL | gene | WBGene00021807 | |||||||
| WormFlux | gene | WBGene00021807 | |||||||
| NDB | locus_tag | CELE_Y53G8AM.7 | |||||||
| NCBI | gene | 190239 | |||||||
| RefSeq | protein | NM_065280.2 | |||||||
| TREEFAM | TREEFAM_ID | TF322131 | |||||||
| TrEMBL | UniProtAcc | A0A8D9J776 | |||||||
| UniProt_GCRP | UniProtAcc | A0A8D9J776 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (89) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | Sp34_30323200 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | |||||
| chrIII_pilon.g7225 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00016255 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00021804 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00021806 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalappaap; ABarppaapp; ABarpppapp; ABplaapappp; and ABplapaaaap based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including eat-2; pgl-1; and alg-1 based on microarray and RNA-seq studies. Is affected by Rifampin; allantoin; and resveratrol based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: zinc-RING finger domain; Zinc finger, RING/FYVE/PHD-type; and Zinc finger, RING-type. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y53G8AM.7 | |||||||
| Corresponding_CDS_history | Y53G8AM.7:wp279 | ||||||||
| Corresponding_transcript | Y53G8AM.7.1 | ||||||||
| Associated_feature | WBsf991714 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00057309 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00070837 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020961 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037435 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020962 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070836 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025067 | ||||||||
| Expr1160746 | |||||||||
| Expr2007870 | |||||||||
| Expr2026111 | |||||||||
| Drives_construct | WBCnstr00024431 | ||||||||
| Construct_product | WBCnstr00024431 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (52) | |||||||||
| Interaction | WBInteraction000008036 | ||||||||
| Map_info | Positive | Positive_clone | Y53G8AM | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -7.31708 | |||||||
| Method | Gene |
