WormBase Tree Display for Gene: WBGene00021783
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| WBGene00021783 | SMap | S_parent | Sequence | Y51H7C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | alkb-1 | Person_evidence | WBPerson117 | |||||
| WBPerson7169 | |||||||||
| Sequence_name | Y51H7C.5 | ||||||||
| Molecular_name | Y51H7C.5 | ||||||||
| Y51H7C.5.1 | |||||||||
| CE45372 | |||||||||
| Other_name | Y51H7C.o | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y51H7C.5 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | alkb-1 | ||||||||
| DB_info | Database | AceView | gene | 2B705 | |||||
| WormQTL | gene | WBGene00021783 | |||||||
| WormFlux | gene | WBGene00021783 | |||||||
| NDB | locus_tag | CELE_Y51H7C.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021783|UniProtKB=E0DBL0 | |||||||
| family | PTHR16557 | ||||||||
| NCBI | gene | 190176 | |||||||
| RefSeq | protein | NM_061568.9 | |||||||
| TREEFAM | TREEFAM_ID | TF314609 | |||||||
| TrEMBL | UniProtAcc | E0DBL0 | |||||||
| UniProt_GCRP | UniProtAcc | E0DBL0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 Aug 2010 09:56:20 | WBPerson1867 | Event | Acquires_merge | WBGene00021782 | ||||
| 3 | 07 Jun 2018 14:30:09 | WBPerson1983 | Name_change | CGC_name | alkb-1 | ||||
| Acquires_merge | WBGene00021782 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | alkb | ||||||||
| Allele (254) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP2048 | ||||||||
| Ortholog (31) | |||||||||
| Structured_description | Automated_description | Predicted to enable ferrous iron binding activity; oxidative DNA demethylase activity; and oxidative RNA demethylase activity. Predicted to be involved in oxidative RNA demethylation and oxidative single-stranded DNA demethylation. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human ALKBH1 (alkB homolog 1, histone H2A dioxygenase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y51H7C.5 | |||||||
| Corresponding_CDS_history | Y51H7C.5:wp86 | ||||||||
| Y51H7C.5:wp149 | |||||||||
| Y51H7C.5:wp218 | |||||||||
| Corresponding_transcript | Y51H7C.5.1 | ||||||||
| Other_sequence (41) | |||||||||
| Associated_feature | WBsf1011547 | ||||||||
| WBsf220844 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057212 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00114491 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114502 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114488 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114490 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114489 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057213 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114487 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020349 | ||||||||
| Expr1039552 | |||||||||
| Expr1160648 | |||||||||
| Expr2007806 | |||||||||
| Expr2026046 | |||||||||
| Microarray_results (36) | |||||||||
| Expression_cluster (78) | |||||||||
| Map_info | Positive | Positive_clone | Y51H7C | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | -15.4533 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
