WormBase Tree Display for Gene: WBGene00021780
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| WBGene00021780 | SMap | S_parent | Sequence | Y51H7C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | scl-17 | Person_evidence | WBPerson261 | |||||
| Sequence_name | Y51H7C.2 | ||||||||
| Molecular_name | Y51H7C.2 | ||||||||
| Y51H7C.2.1 | |||||||||
| CE25386 | |||||||||
| Other_name | Y51H7C.e | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y51H7C.r | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y51H7C.2 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | scl-17 | ||||||||
| DB_info | Database | AceView | gene | 2B735 | |||||
| WormQTL | gene | WBGene00021780 | |||||||
| WormFlux | gene | WBGene00021780 | |||||||
| NDB | locus_tag | CELE_Y51H7C.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021780|UniProtKB=Q9N3I3 | |||||||
| family | PTHR10334 | ||||||||
| NCBI | gene | 190174 | |||||||
| RefSeq | protein | NM_061574.3 | |||||||
| TREEFAM | TREEFAM_ID | TF352352 | |||||||
| TrEMBL | UniProtAcc | Q9N3I3 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N3I3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Nov 2007 11:51:23 | WBPerson2970 | Name_change | CGC_name | scl-17 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scl | ||||||||
| Allele (22) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00093785 | ||||||||
| Ortholog (46) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Automated_description | Predicted to be located in extracellular space. Is an ortholog of several human genes including CRISPLD1 (cysteine rich secretory protein LCCL domain containing 1); GLIPR1 (GLI pathogenesis related 1); and PI15 (peptidase inhibitor 15). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y51H7C.2 | |||||||
| Corresponding_transcript | Y51H7C.2.1 | ||||||||
| Associated_feature | WBsf220846 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00057210 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037382 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024072 | ||||||||
| Expr1160646 | |||||||||
| Expr2015629 | |||||||||
| Expr2033863 | |||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (61) | |||||||||
| Interaction | WBInteraction000122985 | ||||||||
| WBInteraction000123335 | |||||||||
| WBInteraction000464365 | |||||||||
| WBInteraction000464366 | |||||||||
| WBInteraction000468780 | |||||||||
| Map_info | Map | II | Position | -15.4438 | Error | 0.002304 | |||
| Positive | Positive_clone | Y51H7C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
