WormBase Tree Display for Gene: WBGene00021733
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| WBGene00021733 | SMap | S_parent | Sequence | Y50C1A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | otub-2 | Person_evidence | WBPerson260 | |||||
| Sequence_name | Y50C1A.1 | ||||||||
| Molecular_name | Y50C1A.1a | ||||||||
| Y50C1A.1a.1 | |||||||||
| CE31379 | |||||||||
| Y50C1A.1b | |||||||||
| CE49387 | |||||||||
| Y50C1A.1b.1 | |||||||||
| Other_name | CELE_Y50C1A.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | otub-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 28 Sep 2012 14:29:00 | WBPerson2970 | Name_change | CGC_name | otub-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | otub | ||||||||
| Allele (346) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00094896 | ||||||||
| 00094897 | |||||||||
| 00094898 | |||||||||
| 00094899 | |||||||||
| 00094900 | |||||||||
| 00094901 | |||||||||
| Ortholog (42) | |||||||||
| Structured_description | Concise_description | The Y50C1A.1 gene encodes an A20-like protease homolog that may be involved in apoptosis. | Paper_evidence | WBPaper00004589 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity and cysteine-type deubiquitinase activity. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human OTUD7A (OTU deubiquitinase 7A) and OTUD7B (OTU deubiquitinase 7B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y50C1A.1a | |||||||
| Y50C1A.1b | |||||||||
| Corresponding_transcript | Y50C1A.1a.1 | ||||||||
| Y50C1A.1b.1 | |||||||||
| Other_sequence (49) | |||||||||
| Associated_feature | WBsf980925 | ||||||||
| WBsf982488 | |||||||||
| WBsf217129 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004692 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00116428 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113708 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057064 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113704 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094705 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037319 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026451 | ||||||||
| Expr1039523 | |||||||||
| Expr1160509 | |||||||||
| Expr2014666 | |||||||||
| Expr2032899 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (81) | |||||||||
| Map_info | Map | I | Position | -19.0442 | |||||
| Positive | Positive_clone | Y50C1A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057764 | |||||||||
| WBPaper00060825 | |||||||||
| WBPaper00062623 | |||||||||
| WBPaper00063115 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
