WormBase Tree Display for Gene: WBGene00021701
expand all nodes | collapse all nodes | view schema
| WBGene00021701 | SMap | S_parent | Sequence | Y48G9A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y48G9A.7 | |||||||
| Molecular_name | Y48G9A.7a | ||||||||
| Y48G9A.7a.1 | |||||||||
| CE22767 | |||||||||
| Y48G9A.7b | |||||||||
| CE54291 | |||||||||
| Y48G9A.7b.1 | |||||||||
| Other_name | Y48G9A.i | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y48G9A.7 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | Y48G9A.7 | ||||||||
| DB_info | Database | AceView | gene | 3D199 | |||||
| WormQTL | gene | WBGene00021701 | |||||||
| WormFlux | gene | WBGene00021701 | |||||||
| NDB | locus_tag | CELE_Y48G9A.7 | |||||||
| NCBI | gene | 190054 | |||||||
| RefSeq | protein | NM_001393291.1 | |||||||
| NM_065100.4 | |||||||||
| TrEMBL | UniProtAcc | A0A7R9XMZ8 | |||||||
| Q9N3M9 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A7R9XMZ8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (43) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00162222 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||
| WBGene00062008 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
| chrIII_pilon.g7050 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| chrIII_pilon.g7051 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00019090 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00019964 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00021478 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00044519 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Automated_description | Enriched in AMshL; AMshR; OLL; and PVD based on microarray; tiling array; and single-cell RNA-seq studies. Is affected by several genes including clk-1; pgl-1; and alg-1 based on microarray and RNA-seq studies. Is affected by nine chemicals including hydrogen sulfide; rotenone; and Psoralens based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48G9A.7a | |||||||
| Y48G9A.7b | |||||||||
| Corresponding_transcript | Y48G9A.7a.1 | ||||||||
| Y48G9A.7b.1 | |||||||||
| Associated_feature | WBsf991464 | ||||||||
| WBsf1014364 | |||||||||
| WBsf224488 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056985 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037278 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026544 | ||||||||
| Expr1160431 | |||||||||
| Expr2007705 | |||||||||
| Expr2025946 | |||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (105) | |||||||||
| Interaction | WBInteraction000032249 | ||||||||
| Map_info | Positive | Positive_clone | Y48G9A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -15.2399 | |||||||
| Method | Gene |
