WormBase Tree Display for Gene: WBGene00021440
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WBGene00021440 | SMap | S_parent | Sequence | Y39A3CL | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | rexd-1 | Paper_evidence | WBPaper00066109 | |||
Sequence_name | Y39A3CL.1 | ||||||
Molecular_name | Y39A3CL.1a | ||||||
Y39A3CL.1a.1 | |||||||
CE42034 | |||||||
Y39A3CL.1b | |||||||
CE54516 | |||||||
Y39A3CL.1b.1 | |||||||
Other_name | CELE_Y39A3CL.1 | Accession_evidence | NDB | BX284603 | |||
Public_name | rexd-1 | ||||||
DB_info | Database | AceView | gene | 3C935 | |||
WormQTL | gene | WBGene00021440 | |||||
WormFlux | gene | WBGene00021440 | |||||
NDB | locus_tag | CELE_Y39A3CL.1 | |||||
NCBI | gene | 175329 | |||||
RefSeq | protein | NM_065062.8 | |||||
NM_001404269.1 | |||||||
TrEMBL | UniProtAcc | A0A8S4QBU0 | |||||
Q9N412 | |||||||
UniProt_GCRP | UniProtAcc | Q9N412 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | rexd | ||||||
Allele (401) | |||||||
RNASeq_FPKM (74) | |||||||
Contained_in_operon | CEOP3068 | ||||||
Ortholog (23) | |||||||
Structured_description | Automated_description | Enriched in several structures, including I5 neuron; cholinergic neurons; germ line; germline precursor cell; and retrovesicular ganglion based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including dpy-10; hsf-1; and sir-2.1 based on microarray; RNA-seq; and proteomic studies. Is affected by eleven chemicals including Alovudine; stavudine; and Zidovudine based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y39A3CL.1a | |||||
Y39A3CL.1b | |||||||
Corresponding_CDS_history | Y39A3CL.1:wp91 | ||||||
Y39A3CL.1:wp186 | |||||||
Corresponding_transcript | Y39A3CL.1a.1 | ||||||
Y39A3CL.1b.1 | |||||||
Other_sequence | CBC16033_1 | ||||||
CRC12039_1 | |||||||
MHC08002_1 | |||||||
CR11674 | |||||||
GO250881.1 | |||||||
MH09677 | |||||||
Associated_feature | WBsf991399 | ||||||
WBsf991400 | |||||||
WBsf1014311 | |||||||
WBsf1014312 | |||||||
WBsf224470 | |||||||
Experimental_info | RNAi_result | WBRNAi00020367 | Inferred_automatically | RNAi_primary | |||
WBRNAi00056142 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00020359 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1014249 | ||||||
Expr1039365 | |||||||
Expr1159654 | |||||||
Expr2007356 | |||||||
Expr2025590 | |||||||
Microarray_results (22) | |||||||
Expression_cluster (83) | |||||||
Interaction (2) | |||||||
Map_info | Map | III | Position | -15.9748 | |||
Positive | Positive_clone | Y39A3CL | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00058178 | ||||||
WBPaper00063563 | |||||||
WBPaper00066109 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |