WormBase Tree Display for Gene: WBGene00021420
expand all nodes | collapse all nodes | view schema
WBGene00021420 | SMap | S_parent | Sequence | Y38F2AR | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | trap-3 | |||||
Sequence_name | Y38F2AR.2 | ||||||
Molecular_name | Y38F2AR.2 | ||||||
Y38F2AR.2.1 | |||||||
CE21634 | |||||||
Other_name | Y38F2A_6126.e | Curator_confirmed | WBPerson1983 | ||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||
CELE_Y38F2AR.2 | Accession_evidence | NDB | BX284604 | ||||
Public_name | trap-3 | ||||||
DB_info | Database | AceView | gene | 4D153 | |||
WormQTL | gene | WBGene00021420 | |||||
WormFlux | gene | WBGene00021420 | |||||
NDB | locus_tag | CELE_Y38F2AR.2 | |||||
Panther | gene | CAEEL|WormBase=WBGene00021420|UniProtKB=Q95XS1 | |||||
family | PTHR13399 | ||||||
NCBI | gene | 177028 | |||||
RefSeq | protein | NM_067797.8 | |||||
TREEFAM | TREEFAM_ID | TF314998 | |||||
TrEMBL | UniProtAcc | Q95XS1 | |||||
UniProt_GCRP | UniProtAcc | Q95XS1 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | trap | ||||||
Allele (19) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00089303 | ||||||
00089304 | |||||||
00089305 | |||||||
00089306 | |||||||
00089307 | |||||||
00125784 | |||||||
00125785 | |||||||
Contained_in_operon | CEOP4684 | ||||||
Ortholog (36) | |||||||
Structured_description | Automated_description | Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in endoplasmic reticulum. Is an ortholog of human SSR3 (signal sequence receptor subunit 3). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y38F2AR.2 | |||||
Corresponding_transcript | Y38F2AR.2.1 | ||||||
Other_sequence (62) | |||||||
Associated_feature | WBsf047621 | ||||||
WBsf645839 | |||||||
WBsf659985 | |||||||
WBsf981689 | |||||||
WBsf995676 | |||||||
WBsf995677 | |||||||
WBsf1016895 | |||||||
WBsf228019 | |||||||
WBsf228020 | |||||||
Experimental_info | RNAi_result | WBRNAi00020302 | Inferred_automatically | RNAi_primary | |||
WBRNAi00056050 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00020306 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1014193 | ||||||
Expr1039356 | |||||||
Expr1159574 | |||||||
Expr2017483 | |||||||
Expr2035622 | |||||||
Microarray_results (23) | |||||||
Expression_cluster (178) | |||||||
Interaction | WBInteraction000174507 | ||||||
WBInteraction000174518 | |||||||
WBInteraction000174519 | |||||||
WBInteraction000559582 | |||||||
WBInteraction000572029 | |||||||
WBInteraction000582724 | |||||||
WBInteraction000583528 | |||||||
WBInteraction000585750 | |||||||
Map_info | Map | IV | Position | -7.60168 | Error | 0.036956 | |
Positive | Positive_clone | Y38F2AR | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (4) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |