WormBase Tree Display for Gene: WBGene00021297
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| WBGene00021297 | SMap | S_parent | Sequence | Y27F2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxc-55 | Person_evidence | WBPerson655 | |||||
| Sequence_name | Y27F2A.5 | ||||||||
| Molecular_name | Y27F2A.5 | ||||||||
| Y27F2A.5.1 | |||||||||
| CE54515 | |||||||||
| Other_name | CELE_Y27F2A.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | fbxc-55 | ||||||||
| DB_info | Database | AceView | gene | 2D452 | |||||
| WormQTL | gene | WBGene00021297 | |||||||
| WormFlux | gene | WBGene00021297 | |||||||
| NDB | locus_tag | CELE_Y27F2A.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021297|UniProtKB=A3KFC9 | |||||||
| family | PTHR31379 | ||||||||
| NCBI | gene | 189559 | |||||||
| RefSeq | protein | NM_062063.4 | |||||||
| TREEFAM | TREEFAM_ID | TF322489 | |||||||
| TrEMBL | UniProtAcc | A0A8S4QCF2 | |||||||
| UniProt_GCRP | UniProtAcc | A0A8S4QCF2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 Jun 2008 14:44:53 | WBPerson2970 | Name_change | CGC_name | fbxc-55 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxc | ||||||||
| Allele (66) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00151193 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||
| WBGene00064678 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
| chrII_pilon.g3882 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (50) | |||||||||
| Structured_description | Automated_description | Is affected by several genes including elt-2; met-2; and hpl-2 based on tiling array and RNA-seq studies. Is affected by four chemicals including Psoralens; allantoin; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF3557 and Domain of unknown function (DUF3557). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y27F2A.5 | |||||||
| Corresponding_CDS_history | Y27F2A.5:wp172 | ||||||||
| Y27F2A.5:wp282 | |||||||||
| Corresponding_transcript | Y27F2A.5.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00075584 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1025293 | ||||||||
| Expr1159289 | |||||||||
| Expr2011737 | |||||||||
| Microarray_results | 186073_at | ||||||||
| A_12_P110290 | |||||||||
| GPL14144_Y27F2A.5_836-895_0.953_2_A | |||||||||
| GPL19516_CGZ0043664 | |||||||||
| GPL21109_Y27F2A.5 | |||||||||
| GPL3518_CE26057 | |||||||||
| GPL8304_CE_WBGene00021297_A | |||||||||
| GPL8673_Y27F2A_5P03624 | |||||||||
| GPL9450_Y27F2A.5 | |||||||||
| cea2.i.16639 | |||||||||
| Expression_cluster (35) | |||||||||
| Map_info | Map | II | Position | -8.09212 | Error | 0.018987 | |||
| Positive | Positive_clone | Y27F2A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
