WormBase Tree Display for Gene: WBGene00020453
expand all nodes | collapse all nodes | view schema
WBGene00020453 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-55 | Person_evidence | WBPerson655 | |||||
Sequence_name | T12B5.6 | ||||||||
Molecular_name | T12B5.6b | ||||||||
T12B5.6a | |||||||||
CE39403 | |||||||||
T12B5.6c | |||||||||
CE51680 | |||||||||
T12B5.6b.1 | |||||||||
T12B5.6c.1 | |||||||||
Other_name | CELE_T12B5.6 | Accession_evidence | NDB | BX284603 | |||||
Public_name | fbxa-55 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00020453 | |||||
WormFlux | gene | WBGene00020453 | |||||||
NDB | locus_tag | CELE_T12B5.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00020453|UniProtKB=Q2WF55 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 188445 | |||||||
RefSeq | protein | NM_001047409.4 | |||||||
NM_001330938.4 | |||||||||
NR_138510.1 | |||||||||
TREEFAM | TREEFAM_ID | TF322360 | |||||||
TrEMBL | UniProtAcc | A0A163VTZ6 | |||||||
Q2WF55 | |||||||||
UniProt_GCRP | UniProtAcc | Q2WF55 | |||||||
RNAcentral | URSid | URS00009E1D4F | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-55 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (125) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (25) | |||||||||
Paralog (222) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in AFD; ASER; and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twelve chemicals including rotenone; metformin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T12B5.6b | |||||||
T12B5.6c | |||||||||
Corresponding_CDS_history (2) | |||||||||
Corresponding_transcript | T12B5.6a | ||||||||
T12B5.6b.1 | |||||||||
T12B5.6c.1 | |||||||||
Other_sequence | Oden_isotig22831 | ||||||||
Associated_feature (2) | |||||||||
Experimental_info (7) | |||||||||
Map_info | Map | III | Position | -25.0866 | Error | 0.003123 | |||
Positive | Positive_clone | T12B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |