WormBase Tree Display for Gene: WBGene00020266
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| WBGene00020266 | SMap | S_parent | Sequence | T05H4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | T05H4.3 | |||||||
| Molecular_name | T05H4.3 | ||||||||
| T05H4.3.1 | |||||||||
| CE52162 | |||||||||
| Other_name | CELE_T05H4.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | T05H4.3 | ||||||||
| DB_info | Database | AceView | gene | 5G927 | |||||
| WormQTL | gene | WBGene00020266 | |||||||
| WormFlux | gene | WBGene00020266 | |||||||
| NDB | locus_tag | CELE_T05H4.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020266|UniProtKB=O16524 | |||||||
| family | PTHR46652 | ||||||||
| NCBI | gene | 188149 | |||||||
| RefSeq | protein | NM_001356665.1 | |||||||
| TREEFAM | TREEFAM_ID | TF315818 | |||||||
| TrEMBL | UniProtAcc | O16524 | |||||||
| UniProt_GCRP | UniProtAcc | O16524 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (74) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00028245 | ||||||||
| Ortholog (22) | |||||||||
| Paralog | WBGene00011637 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00015516 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019842 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00189952 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in neurons based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including sir-2.1; pgl-1; and alg-1 based on RNA-seq and microarray studies. Is affected by seven chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Leucine-rich repeat, typical subtype; Leucine rich repeat 4; Leucine-rich repeat; U2A'/phosphoprotein 32 family A, C-terminal; Leucine-rich repeat domain superfamily; and Leucine Rich repeats (2 copies). Is an ortholog of human LRRC9 (leucine rich repeat containing 9). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T05H4.3 | |||||||
| Corresponding_CDS_history | T05H4.3:wp261 | ||||||||
| Corresponding_transcript | T05H4.3.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00018262 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052590 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028886 | ||||||||
| Expr1156204 | |||||||||
| Expr2005908 | |||||||||
| Expr2024124 | |||||||||
| Drives_construct | WBCnstr00025253 | ||||||||
| Construct_product | WBCnstr00025253 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (41) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Positive | Positive_clone | T05H4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | -0.163424 | |||||||
| Reference | WBPaper00036186 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
