WormBase Tree Display for Gene: WBGene00020092
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| WBGene00020092 | SMap | S_parent | Sequence | R144 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pcf-11 | Person_evidence | WBPerson5509 | |||||
| Sequence_name | R144.2 | ||||||||
| Molecular_name | R144.2a | ||||||||
| R144.2a.1 | |||||||||
| CE02032 | |||||||||
| R144.2b | |||||||||
| CE32709 | |||||||||
| R144.2a.2 | |||||||||
| R144.2b.1 | |||||||||
| R144.2b.2 | |||||||||
| Other_name | CELE_R144.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | pcf-11 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 10 Nov 2008 17:10:59 | WBPerson2970 | Name_change | CGC_name | pcf-11 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pcf | ||||||||
| Allele (60) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP3868 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA polymerase II complex binding activity and mRNA binding activity. Predicted to be involved in mRNA polyadenylation and termination of RNA polymerase II transcription. Predicted to be located in cytoplasm. Predicted to be part of mRNA cleavage factor complex. Is an ortholog of human PCF11 (PCF11 cleavage and polyadenylation factor subunit). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R144.2a | |||||||
| R144.2b | |||||||||
| Corresponding_transcript | R144.2a.1 | ||||||||
| R144.2a.2 | |||||||||
| R144.2b.1 | |||||||||
| R144.2b.2 | |||||||||
| Other_sequence (33) | |||||||||
| Associated_feature | WBsf645139 | ||||||||
| WBsf645140 | |||||||||
| WBsf992272 | |||||||||
| WBsf1014830 | |||||||||
| WBsf224843 | |||||||||
| WBsf224844 | |||||||||
| WBsf224845 | |||||||||
| WBsf224846 | |||||||||
| WBsf224847 | |||||||||
| WBsf224848 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr1026439 | ||||||||
| Expr1038731 | |||||||||
| Expr1155602 | |||||||||
| Expr2014776 | |||||||||
| Expr2033010 | |||||||||
| Drives_construct | WBCnstr00025378 | ||||||||
| Construct_product | WBCnstr00025378 | ||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (107) | |||||||||
| Interaction (139) | |||||||||
| Map_info | Map | III | Position | -2.21101 | Error | 0.00377 | |||
| Positive | Positive_clone | R144 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006292 | ||||||||
| WBPaper00019445 | |||||||||
| WBPaper00032289 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058884 | |||||||||
| WBPaper00059048 | |||||||||
| WBPaper00064934 | |||||||||
| Remark | [060720] Removed WBGene00020092 from operon CEOP3256 following correspondence with Tom Blumenthal, there is no evidence for this gene being on the operon at this time. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
