WormBase Tree Display for Gene: WBGene00019800
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| WBGene00019800 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | mtss-1 | |||||||
| Sequence_name | PAR2.1 | ||||||||
| Molecular_name | PAR2.1 | ||||||||
| PAR2.1.1 | |||||||||
| CE00768 | |||||||||
| Other_name | CELE_PAR2.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | mtss-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 23 Oct 2007 13:07:05 | WBPerson2970 | Name_change | CGC_name | mtss-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mtss | ||||||||
| Allele (12) | |||||||||
| Strain | WBStrain00001199 | ||||||||
| WBStrain00051183 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP3540 | ||||||||
| Ortholog (25) | |||||||||
| Structured_description | Automated_description | Predicted to enable single-stranded DNA binding activity. Predicted to be involved in mitochondrial DNA replication. Predicted to be located in mitochondrial nucleoid. Expressed in head; intestine; and tail. Human ortholog(s) of this gene implicated in optic atrophy. Is an ortholog of human SSBP1 (single stranded DNA binding protein 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:5723 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11317) | ||||
| Molecular_info | Corresponding_CDS | PAR2.1 | |||||||
| Corresponding_transcript | PAR2.1.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf645442 | ||||||||
| WBsf645443 | |||||||||
| WBsf225467 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00017284 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00005638 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051078 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061859 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034503 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1681 | ||||||||
| Expr6440 | |||||||||
| Expr12843 | |||||||||
| Expr1012459 | |||||||||
| Expr1038573 | |||||||||
| Expr1154791 | |||||||||
| Expr2013818 | |||||||||
| Expr2032058 | |||||||||
| Drives_construct | WBCnstr00002092 | ||||||||
| WBCnstr00022896 | |||||||||
| WBCnstr00025589 | |||||||||
| Construct_product | WBCnstr00022896 | ||||||||
| WBCnstr00025589 | |||||||||
| Regulate_expr_cluster | WBPaper00031039:mtss-1(RNAi)_downregulated | ||||||||
| WBPaper00031039:mtss-1(RNAi)_upregulated | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (124) | |||||||||
| Interaction (45) | |||||||||
| Map_info | Map | III | Position | -0.057593 | Error | 0.001501 | |||
| Positive | Positive_clone | PAR2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031039 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065799 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
