WormBase Tree Display for Gene: WBGene00019457
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| WBGene00019457 | SMap | S_parent | Sequence | K06H7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vms-1 | Paper_evidence | WBPaper00037927 | |||||
| Person_evidence | WBPerson1657 | ||||||||
| Sequence_name | K06H7.3 | ||||||||
| Molecular_name | K06H7.3 | ||||||||
| K06H7.3.1 | |||||||||
| CE26941 | |||||||||
| Other_name | CELE_K06H7.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | vms-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Nov 2011 13:49:31 | WBPerson2970 | Name_change | CGC_name | vms-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vms | ||||||||
| Allele (37) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP3480 | ||||||||
| Ortholog (28) | |||||||||
| Structured_description | Automated_description | Predicted to enable endonuclease activity and metal ion binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Located in cytoplasm and dendrite. Expressed in amphid neurons; head neurons; intestine; tail neurons; and ventral nerve cord. Is an ortholog of human ANKZF1 (ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K06H7.3 | |||||||
| Corresponding_transcript | K06H7.3.1 | ||||||||
| Other_sequence | Tcol_isotig05663 | ||||||||
| Acan_isotig03589 | |||||||||
| SR04510 | |||||||||
| MP00165 | |||||||||
| CR01438 | |||||||||
| CRC07416_1 | |||||||||
| JI471746.1 | |||||||||
| Tcol_isotig05662 | |||||||||
| Acan_isotig03590 | |||||||||
| JI466100.1 | |||||||||
| Associated_feature | WBsf659224 | ||||||||
| WBsf659225 | |||||||||
| WBsf225343 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00016685 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00050081 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113302 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050071 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076546 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113073 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9179 | ||||||||
| Expr1011223 | |||||||||
| Expr1038402 | |||||||||
| Expr1153774 | |||||||||
| Expr2018005 | |||||||||
| Expr2036142 | |||||||||
| Drives_construct | WBCnstr00013773 | ||||||||
| WBCnstr00025823 | |||||||||
| Construct_product | WBCnstr00013773 | ||||||||
| WBCnstr00025823 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (96) | |||||||||
| Interaction (22) | |||||||||
| Map_info | Map | III | Position | -0.379244 | |||||
| Positive | Positive_clone | K06H7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026601 | ||||||||
| WBPaper00037927 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064375 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
