WormBase Tree Display for Gene: WBGene00019416
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WBGene00019416 | SMap | S_parent | Sequence | K05F6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxb-44 | Person_evidence | WBPerson655 | |||||
Sequence_name | K05F6.5 | ||||||||
Molecular_name | K05F6.5 | ||||||||
K05F6.5.1 | |||||||||
CE39513 | |||||||||
Other_name | CELE_K05F6.5 | Accession_evidence | NDB | BX284602 | |||||
Public_name | fbxb-44 | ||||||||
DB_info | Database | AceView | gene | 2B833 | |||||
WormQTL | gene | WBGene00019416 | |||||||
WormFlux | gene | WBGene00019416 | |||||||
NDB | locus_tag | CELE_K05F6.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00019416|UniProtKB=Q2V072 | |||||||
family | PTHR22899 | ||||||||
NCBI | gene | 187035 | |||||||
RefSeq | protein | NM_061590.5 | |||||||
TREEFAM | TREEFAM_ID | TF319367 | |||||||
TrEMBL | UniProtAcc | Q2V072 | |||||||
UniProt_GCRP | UniProtAcc | Q2V072 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Dec 2005 17:22:20 | WBPerson2970 | Name_change | CGC_name | fbxb-44 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxb | ||||||||
Allele (105) | |||||||||
Strain | WBStrain00032738 | ||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (47) | |||||||||
Paralog (143) | |||||||||
Structured_description | Concise_description | K05F6.5 encodes an unusual paraoxonase-like protein with an N-terminal F-box domain; it is homologous to the human PARAOXONASE 1 gene (PON1, OMIM:168820), which in some allelic forms is associated with susceptibility to coronary artery disease. | Paper_evidence | WBPaper00005591 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including I5 neuron; RME; ciliated neurons; enteric muscle; and head mesodermal cell based on tiling array and single-cell RNA-seq studies. Is affected by several genes including daf-2; age-1; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by seventeen chemicals including hydrogen sulfide; rotenone; and bisphenol A based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; F-box associated; and F-box associated domain, type 2. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | K05F6.5 | |||||||
Corresponding_CDS_history | K05F6.5:wp152 | ||||||||
Corresponding_transcript | K05F6.5.1 | ||||||||
Associated_feature | WBsf643965 | ||||||||
WBsf643966 | |||||||||
WBsf986729 | |||||||||
WBsf986730 | |||||||||
WBsf220850 | |||||||||
Experimental_info | RNAi_result | WBRNAi00016640 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00050004 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00050003 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1026181 | ||||||||
Expr1038387 | |||||||||
Expr1153699 | |||||||||
Expr2011645 | |||||||||
Expr2029884 | |||||||||
Drives_construct | WBCnstr00025854 | ||||||||
Construct_product | WBCnstr00025854 | ||||||||
Microarray_results (12) | |||||||||
Expression_cluster (131) | |||||||||
Interaction (224) | |||||||||
Map_info | Map | II | Position | -15.4029 | Error | 0.002662 | |||
Positive | Positive_clone | K05F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |