WormBase Tree Display for Gene: WBGene00019402
expand all nodes | collapse all nodes | view schema
| WBGene00019402 | SMap | S_parent | Sequence | K04G7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | syf-2 | |||||||
| Sequence_name | K04G7.11 | ||||||||
| Molecular_name | K04G7.11 | ||||||||
| K04G7.11.1 | |||||||||
| CE39587 | |||||||||
| Other_name | CELE_K04G7.11 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | syf-2 | ||||||||
| DB_info | Database | AceView | gene | 3I250 | |||||
| WormQTL | gene | WBGene00019402 | |||||||
| WormFlux | gene | WBGene00019402 | |||||||
| NDB | locus_tag | CELE_K04G7.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019402|UniProtKB=Q09385 | |||||||
| family | PTHR13264 | ||||||||
| NCBI | gene | 176003 | |||||||
| RefSeq | protein | NM_001392137.1 | |||||||
| SwissProt | UniProtAcc | Q09385 | |||||||
| TREEFAM | TREEFAM_ID | TF313041 | |||||||
| UniProt_GCRP | UniProtAcc | Q09385 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Apr 2017 11:17:23 | WBPerson2970 | Name_change | CGC_name | syf-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syf | ||||||||
| Allele (13) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00053622 | ||||||||
| 00053623 | |||||||||
| 00053624 | |||||||||
| 00053625 | |||||||||
| 00053626 | |||||||||
| 00053627 | |||||||||
| 00053628 | |||||||||
| 00053629 | |||||||||
| Contained_in_operon | CEOP3412 | ||||||||
| Ortholog (36) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of Prp19 complex; catalytic step 2 spliceosome; and post-mRNA release spliceosomal complex. Is an ortholog of human SYF2 (SYF2 pre-mRNA splicing factor). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K04G7.11 | |||||||
| Corresponding_CDS_history | K04G7.11:wp153 | ||||||||
| Corresponding_transcript | K04G7.11.1 | ||||||||
| Other_sequence (66) | |||||||||
| Associated_feature | WBsf992950 | ||||||||
| WBsf226923 | |||||||||
| Experimental_info | RNAi_result (55) | ||||||||
| Expr_pattern | Expr1020854 | ||||||||
| Expr1038377 | |||||||||
| Expr1153650 | |||||||||
| Expr2017175 | |||||||||
| Expr2035311 | |||||||||
| Drives_construct | WBCnstr00025865 | ||||||||
| Construct_product | WBCnstr00025865 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (88) | |||||||||
| Interaction | WBInteraction000007512 | ||||||||
| WBInteraction000036757 | |||||||||
| WBInteraction000051884 | |||||||||
| WBInteraction000051917 | |||||||||
| WBInteraction000522591 | |||||||||
| WBInteraction000566823 | |||||||||
| WBInteraction000570241 | |||||||||
| WBInteraction000582714 | |||||||||
| Map_info | Positive | Positive_clone | K04G7 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -0.778145 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00041328 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| Picture | WBPicture0000013093 | ||||||||
| Method | Gene |
